PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_50206

Common Name

COCSUDRAFT_46901

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

HB-other

Protein Properties

Length: 1407aa MW: 151741 Da PI: 4.746

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_50206	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.6	2.5e-14	31	84	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +R t+ q e+Le+++ n+ ps e r+ L +++gLt qV++WF rR k+k estExt_fgenesh1_pg.C_50206 31 SRALKTPLQKEALEAAYSINPLPSDEVRKALGERIGLTAHQVQIWFSHRRRKDK 84 688889**********************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-16	8	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-13	25	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.787	26	86	IPR001356	Homeobox domain
SMART	SM00389	5.6E-14	28	90	IPR001356	Homeobox domain
Pfam	PF00046	8.9E-12	31	84	IPR001356	Homeobox domain
CDD	cd00086	2.48E-12	32	84	No hit	No description
PROSITE profile	PS50827	15.31	462	522	IPR018501	DDT domain
SMART	SM00571	4.7E-10	462	522	IPR018501	DDT domain
Pfam	PF02791	3.1E-13	467	517	IPR018501	DDT domain
Pfam	PF05066	1.2E-14	625	693	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.5E-7	779	820	IPR028942	WHIM1 domain
Pfam	PF15613	1.8E-10	939	1011	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1407 aa Download sequence Send to blast
MEGADGEQEP SPAAQGVNGA AEPEETKAKP SRALKTPLQK EALEAAYSIN PLPSDEVRKA 60 LGERIGLTAH QVQIWFSHRR RKDKTAAQAA QASAAAAVPQ AAAAPNPSST PAALPKPSVP 120 PHASSPVQQP AQTPLGQQLA AAEPVVASEE ELQELLSLAR ERLPQPYREE GPPLGMFFDP 180 VPAAEDPGSL PAEIAGEKRK RVMIDDYEME GGEGGDLNVT RMIGDGYGGG WRNDRWGQDR 240 GRQDDRLMRE RDKEMDKLTR EQRRLADREE RERRKADDLK AREDARLRLM QEREAKRMRD 300 VVEKERRAAE RKENVERRRR GGGARPAAAS RRASGPSASL AEFRDLQFAF ASPFSILLAM 360 RHEAQEDEQR MHLLDDNTGE KEMLKALAQQ EKQATRLRQR EANAGPRDDL DIEWESLLAS 420 QRQHLPLPRE GEAPPELPLP ERPPFPPSAL QLPAAFPAEL GDTLGSELLM VWAFLHSFGE 480 LLGLWPATVD ELLAAVVLGE RSRLLGEIHV GLLRLLQADM EEAHASGATQ GGGPSSGLDR 540 AVAMSAGWLE EAWAWGFDVD IWRAHLNALT WPEVLREFAI AAGLGRKRPK PRKEARPKMG 600 TEGEDVVADE AGNLKLRLPP RYAVGTVKAA AWQVLAEAGP DGLGITEIAK RIQKQGLRDL 660 RTSRTPEASV AAALSRDVVF GRTAPATYGL NSLVNNMKLA GLPAPAASAD TEKKEAASDA 720 AGEVKAEVKE EPQGTDKAAG ASADAIAKQE GDANAHGHES DDDSDSEDEE PEEDVVQGEP 780 WVTALETCEY GELSMEMRMA AIVALMHLAL DGPSVRTCLD GRLEEAQRAE KRQRQIEAAE 840 RAKRAAAEAQ RNLELFRQQN GMGPGPSSTP DAEPNPSGAA SATNAQGGAG GQSAARVESS 900 VEPTGPSIME DEVSAANAAK QRQQQRAETI RRAEESNAVR TEPLGQDRRY NRYWRLAAGS 960 EAGSGRIFVE LQDTQTYRIL GQPDTLETLM GALEKRGARE GALYNSLLRH KDSILQGMPA 1020 EPLKMPALSE AEGAQVESEH RAWVYSLPTQ AHVRASDPAI AASLAAEEAA ALAEQSQPRL 1080 AKLKCDLLRV QAALPPPAMA ESWDADAWRQ RVRTASTVVE LRTALGQLEA SLHDEYVSTQ 1140 FKRKPAPVKG ACLSTGKAAG HKQQAAEGAE GTEAQPAAAD VQLLEWLPPT VAAVSLRLGA 1200 LDAALIYSPG MPPARDNLQA YKYIQRPALP VELTEGGMEA QAKGSRVVSG QPIGIGGRSR 1260 PSHFPPFPQA VLQGPPQPFQ LPIEELRAAV AAGEKEGAAE AQGSEPASAS PSLARSTPPV 1320 SRAKGRTSAK AAPRGKSNLR RQLDAMETDD DADEDEGDSA DDMDIDARYP VSSRATPAFS 1380 EEGQDDEEQE SDDDQPGGEE DLEISD*

Sequence ? help Back to Top

Protein Sequence Length: 1407 aa Download sequence Send to blast

MEGADGEQEP SPAAQGVNGA AEPEETKAKP SRALKTPLQK EALEAAYSIN PLPSDEVRKA  60
LGERIGLTAH QVQIWFSHRR RKDKTAAQAA QASAAAAVPQ AAAAPNPSST PAALPKPSVP  120
PHASSPVQQP AQTPLGQQLA AAEPVVASEE ELQELLSLAR ERLPQPYREE GPPLGMFFDP  180
VPAAEDPGSL PAEIAGEKRK RVMIDDYEME GGEGGDLNVT RMIGDGYGGG WRNDRWGQDR  240
GRQDDRLMRE RDKEMDKLTR EQRRLADREE RERRKADDLK AREDARLRLM QEREAKRMRD  300
VVEKERRAAE RKENVERRRR GGGARPAAAS RRASGPSASL AEFRDLQFAF ASPFSILLAM  360
RHEAQEDEQR MHLLDDNTGE KEMLKALAQQ EKQATRLRQR EANAGPRDDL DIEWESLLAS  420
QRQHLPLPRE GEAPPELPLP ERPPFPPSAL QLPAAFPAEL GDTLGSELLM VWAFLHSFGE  480
LLGLWPATVD ELLAAVVLGE RSRLLGEIHV GLLRLLQADM EEAHASGATQ GGGPSSGLDR  540
AVAMSAGWLE EAWAWGFDVD IWRAHLNALT WPEVLREFAI AAGLGRKRPK PRKEARPKMG  600
TEGEDVVADE AGNLKLRLPP RYAVGTVKAA AWQVLAEAGP DGLGITEIAK RIQKQGLRDL  660
RTSRTPEASV AAALSRDVVF GRTAPATYGL NSLVNNMKLA GLPAPAASAD TEKKEAASDA  720
AGEVKAEVKE EPQGTDKAAG ASADAIAKQE GDANAHGHES DDDSDSEDEE PEEDVVQGEP  780
WVTALETCEY GELSMEMRMA AIVALMHLAL DGPSVRTCLD GRLEEAQRAE KRQRQIEAAE  840
RAKRAAAEAQ RNLELFRQQN GMGPGPSSTP DAEPNPSGAA SATNAQGGAG GQSAARVESS  900
VEPTGPSIME DEVSAANAAK QRQQQRAETI RRAEESNAVR TEPLGQDRRY NRYWRLAAGS  960
EAGSGRIFVE LQDTQTYRIL GQPDTLETLM GALEKRGARE GALYNSLLRH KDSILQGMPA  1020
EPLKMPALSE AEGAQVESEH RAWVYSLPTQ AHVRASDPAI AASLAAEEAA ALAEQSQPRL  1080
AKLKCDLLRV QAALPPPAMA ESWDADAWRQ RVRTASTVVE LRTALGQLEA SLHDEYVSTQ  1140
FKRKPAPVKG ACLSTGKAAG HKQQAAEGAE GTEAQPAAAD VQLLEWLPPT VAAVSLRLGA  1200
LDAALIYSPG MPPARDNLQA YKYIQRPALP VELTEGGMEA QAKGSRVVSG QPIGIGGRSR  1260
PSHFPPFPQA VLQGPPQPFQ LPIEELRAAV AAGEKEGAAE AQGSEPASAS PSLARSTPPV  1320
SRAKGRTSAK AAPRGKSNLR RQLDAMETDD DADEDEGDSA DDMDIDARYP VSSRATPAFS  1380
EEGQDDEEQE SDDDQPGGEE DLEISD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	RRRKDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649216.1	0.0	hypothetical protein COCSUDRAFT_46901
TrEMBL	I0Z203	0.0	I0Z203_COCSC; Uncharacterized protein
STRING	XP_005649216.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5105	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	8e-44	homeobox-1

Link Out ? help Back to Top
Entrez Gene	17042673

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]