PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_10729
Common NameCOCSUDRAFT_64395
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family CO-like
Protein Properties Length: 371aa    MW: 39814.7 Da    PI: 6.2351
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_10729genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.1e-083781442
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                              r C+++e ++++ fC++++  lCe+C   +H +      H++vpl
  estExt_Genemark1.C_10729 37 RLCALCECHPAKVFCHNDNAALCESCDADIHLSnplalrHDRVPL 81
                              68*****************************77799999999986 PP
2CCT67.43.9e-23306349144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea+++RY+eKrk+R FeK+irY+sRKa+Ae RpR+KGrF++++
  estExt_Genemark1.C_10729 306 REARVMRYREKRKRRTFEKTIRYQSRKAYAEVRPRIKGRFATKE 349
                               9****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.788127IPR000315B-box-type zinc finger
SMARTSM003363.1E-73481IPR000315B-box-type zinc finger
PROSITE profilePS5011911.3623481IPR000315B-box-type zinc finger
PfamPF006432.1E-63781IPR000315B-box-type zinc finger
CDDcd000211.49E-63781No hitNo description
PfamPF062031.2E-17306348IPR010402CCT domain
PROSITE profilePS5101716.093306348IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0010018Biological Processfar-red light signaling pathway
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MKCQACQTAH AQVYCQESQA ALCKGCSYVM GDITRFRLCA LCECHPAKVF CHNDNAALCE  60
SCDADIHLSN PLALRHDRVP LGPLASDLPK VSAGSSRGWT GRQTDRRGTL GESALGGLHL  120
TVSFWGSDLR AWAQDLFGPT NEAFAASDTD SCLERQTPFA PNHIGESDAD ASVLFVPKGK  180
ASLKEYDVFD LDNAFFGSDL LDFGEEFCQA PSSPSDGVVP TMDIMDSSAS SNTSSQDYSA  240
AAESPNTHAK MGSYSSQEMS DSLSYVPAMP TIPMGSQAIG AGSISPQGSS FEMPSIHLGS  300
SVALDREARV MRYREKRKRR TFEKTIRYQS RKAYAEVRPR IKGRFATKEE VAAMKVAAAA  360
SGTALVPLCA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005652347.10.0CCT-domain-containing protein
TrEMBLI0ZAY40.0I0ZAY4_COCSC; CCT-domain-containing protein
STRINGXP_005652347.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP6111112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-20B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]