PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK22194.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family TALE
Protein Properties Length: 494aa    MW: 55718.9 Da    PI: 6.3456
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK22194.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.6e-104154531854
                HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                +F++  ++yp+ +e++ LA+k gLt++qV++WF N R +
  PK22194.1 415 MFQNflHPYPKDTEKQVLAMKSGLTKNQVSNWFINARVR 453
                6887779******************************88 PP
2BELL80.91.7e-26298364471
       BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                  + k+akLlsll++Vd+rY+q++++++tv+s+F+a+++l++ ++++++Al+++S  ++ L+++i+++
  PK22194.1 298 VTETKRAKLLSLLQMVDERYNQCMDEIHTVVSAFHAATELDP-QIHARFALQTMSVLYKGLRERISKH 364
                5689**************************************.**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.6E-32222363IPR006563POX domain
PfamPF075261.2E-27227362IPR006563POX domain
SMARTSM003892.8E-6397461IPR001356Homeobox domain
CDDcd000864.30E-11397458No hitNo description
PROSITE profilePS5007111.159398457IPR001356Homeobox domain
SuperFamilySSF466891.37E-15399466IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-25400463IPR009057Homeodomain-like
PfamPF059207.6E-15414453IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MESNNNQTFN IPQQMIMTSR NSLLTDGISP HSSAINSSSF DLQSYLYDLQ YYTRDDSDEA  60
SSLGGVGNSS SAICNNSTGH NHGLQENLNN LAISVPHQMY SSNGVLSGFV STENYNNNNN  120
GYVTYNDQTS AFHQTFDQNV WNSNRNNNHI GSSEFSNELS LSLATSQPSV ITGMTTTIPG  180
QCSASAMPTG NTTETMLVSE QASCSNNRGE NLSPSFGSYR PLQLSQVILG SRYLSAAQEI  240
LAHIASFSLE NISYDHHYLS GNYLMNSCSF STMSPMDSTS DGGSILEGET ESETRRRVTE  300
TKRAKLLSLL QMVDERYNQC MDEIHTVVSA FHAATELDPQ IHARFALQTM SVLYKGLRER  360
ISKHWVAMEM DMEKNKCCVT ENEWGVEEVK KKKELLWRPQ RGLPERSVSV LKAWMFQNFL  420
HPYPKDTEKQ VLAMKSGLTK NQVSNWFINA RVRLWKPMIE EMYAELNKRN QSNNNNNQRI  480
SINHNIINQI QRYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14403461563Homeobox protein Meis2
3k2a_B2e-14403461563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097078.21e-152homeobox protein ATH1
RefseqXP_024021825.11e-152homeobox protein ATH1
SwissprotP487314e-94ATH1_ARATH; Homeobox protein ATH1
TrEMBLW9RE351e-151W9RE35_9ROSA; Homeobox protein ATH1
STRINGXP_010097078.11e-152(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59393249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.13e-83homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]