PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK19092.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | Nin-like | ||||||||
Protein Properties | Length: 1045aa MW: 115099 Da PI: 5.4551 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.9 | 4.8e-29 | 632 | 682 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PK19092.1 632 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 682 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.859 | 621 | 702 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.0E-26 | 635 | 682 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 5.89E-23 | 943 | 1036 | No hit | No description |
SMART | SM00666 | 4.0E-24 | 950 | 1032 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 25.91 | 950 | 1032 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 7.9E-25 | 950 | 1031 | No hit | No description |
Pfam | PF00564 | 8.9E-19 | 951 | 1031 | IPR000270 | PB1 domain |
CDD | cd06407 | 9.82E-37 | 951 | 1031 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0010167 | Biological Process | response to nitrate | ||||
GO:0042128 | Biological Process | nitrate assimilation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1045 aa Download sequence Send to blast |
MSESEEEAPP PPPPSTTATI ASNTVSFPPK SSKEVLMDFD LDLDNPWPMD QIAFVSNPMS 60 PLLFSSSSAD HPFSPLWAFA DAENEENNHN NSNNHNSNNN TNNCNSNNNN SSNSNNNSNK 120 FGRHANSTPM ADSSRFSCNS NSVAQRPVGN EENRSLPSPF SGLVPVDNPN GYYWIKERMT 180 QALRYLKEST DQHVLAQVWA PVKNGCRYVL STSGQPFVLD PDSNGLHQYR MVSLMYSFSV 240 DGGETNEVLG LPGRVFRQKL PEWTPNVQYY SITEYPRLDH AQHYNVRGSL ALPVFEPSGQ 300 SCVGVLELIM TSEKINYAPE VDKVCKALEA VNLRSAEILD HTDTQICNEG RQSALTEILE 360 ILTAACETHK LPMAQTWVPC MHRNVLAYGG GLKKNCTSID GSCMGQVCMS TTEVAFYIVD 420 ARMWGFREAC LEHHLQKGQG VAGRAFYSRN LCFSSDITQF CKNEYPLVHY ARMFELTSCF 480 AVCLQSSHTG NDNYVLEFFL PPNTNPSEQH TILGSLLATM KKHFQSLKVA SGIGLEEEGI 540 VEVVRVSANG GLESNLECIR IPQIAESPQG HSALPNGGDM VQRDLMKQPS TVEHDSANGG 600 QDTAHDGGNM NHGSVSDHKE TKKSERKRGK TEKSISLEVL QQYFAGSLKD AAKSLGVCPT 660 TMKRICRQHG ISRWPSRKIN KVNRSLSKLK RVIESVQGAE GAFGLTPIAT SPLPVPVTSI 720 SRPSTSNGTN QQNSPCHVHY DPPLERKDSP TNSSCRRGQT EIEDQLQGGG ILIQKDLVQE 780 NGGFYIPENN RGSNHSKSGS GSREVSVGTP TSHGSCQGSP ANGNIMLKDP FSYSIQEQCI 840 KVEGSPEPTP QPTNGLIFSV PEALVTAESQ EPFGAMLVED AGSSKDLRNL CHASDAILDE 900 SVPEYCWMNP PPLPPRSDFA APKDTTTTTT DIIITQTQPN VNRVSQEMRS VTIKATYRED 960 IIRFRLSLSC NIVELREEVA KRLKMEVGIF DIKYMDDDQE WVLIACDADL QECMDVCRSS 1020 GCNMIRLLIH DIMPNLGSSC ESTEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00449 | DAP | Transfer from AT4G24020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028564.1 | 0.0 | protein NLP6 isoform X1 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A2P5B855 | 0.0 | A0A2P5B855_PARAD; NIN-like transcription factor | ||||
STRING | XP_010107269.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4257 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |