PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18548.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 64aa    MW: 7598.36 Da    PI: 10.7369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18548.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-172063249
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
               +ykGVr +k +g+Wv+eIr p++   r r++lg+++tae+Aa+a +aa
  PK18548.1 20 RYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEKAARAFDAA 63
               69****999.**********933...5******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.77E-202063No hitNo description
SMARTSM003801.6E-132064IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-232063IPR001471AP2/ERF domain
PfamPF008476.0E-112063IPR001471AP2/ERF domain
PROSITE profilePS5103219.522064IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-162063IPR016177DNA-binding domain
PRINTSPR003671.0E-102132IPR001471AP2/ERF domain
PRINTSPR003671.0E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MVKQNTIEKN QPESERNDLR YKGVRKRKWG KWVSEIRLPN SRERIWLGSY DTAEKAARAF  60
DAAX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783863e-33KF678386.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5H) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625863.13e-28PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ9S7L52e-24ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A2P5CYA65e-31A0A2P5CYA6_PARAD; AP2/ERF domain containing protein
STRINGXP_008242271.12e-27(Prunus mume)
STRINGEOY302032e-27(Theobroma cacao)
STRINGEMJ059282e-27(Prunus persica)
STRINGXP_004287662.12e-27(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-19ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]