PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK13609.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GATA

Protein Properties

Length: 312aa MW: 33532.9 Da PI: 5.982

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK13609.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.9	1.2e-17	177	211	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l PK13609.1 177 CTHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 211 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	7.3E-17	171	221	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.82	171	207	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.14E-12	174	218	No hit	No description
Gene3D	G3DSA:3.30.50.10	6.1E-14	175	209	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.80E-13	176	219	No hit	No description
PROSITE pattern	PS00344	0	177	202	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.6E-15	177	211	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009416	Biological Process	response to light stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDHELPTHHQ QDCFGIDDLL DFSNNDDEQF FSSSSNFDVP QHHHCLPPLL PQTSASAHFF 60 NPPDFTSDLC VPSDDVAELE WLSRFADDSF NDLPTGEIPG ALTYPNDASF AGRARSKRSR 120 VPITGANTSW GSISNQPTPQ ELESSSSISA KTKSKREEAS GSNVNPSSTV SGGARRCTHC 180 ASEKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAE PDICPDTALK LPPESNGAPS 240 PERDDTSTTA PATTGRAGSA LPATARPILL SSPRVSSMLS HGTRVDQCIT TTATASSTRT 300 TVTTFLFHPR SQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00415	DAP	Transfer from AT3G60530	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024032949.1	3e-70	GATA transcription factor 4
Swissprot	O49741	2e-52	GATA2_ARATH; GATA transcription factor 2
Swissprot	O49743	2e-52	GATA4_ARATH; GATA transcription factor 4
TrEMBL	A0A2P5CJF9	2e-76	A0A2P5CJF9_PARAD; GATA transcription factor
STRING	XP_010089251.1	3e-68	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13550	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60530.1	1e-52	GATA transcription factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]