PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11095.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 538aa    MW: 59396.2 Da    PI: 6.8613
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11095.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16741135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  PK11095.1  7 CHHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
               ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-11545No hitNo description
CDDcd002022.29E-17654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.121740IPR000679Zinc finger, GATA-type
PfamPF003203.7E-14741IPR000679Zinc finger, GATA-type
PfamPF139192.0E-7280365IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGKQGPCHHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDFDDH  60
RVSRVKSISI IKNKEAKLLK RKQNYDSMVV GGFAADYSQG FRKVMEEDAS NRSSSGSAIS  120
NSESCAQFGG GDASDLTGPA QSNAWDTTVP CRKRTCIVRP KQSPVEKLTR DLFTILQEQQ  180
SSYFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPNAIAR EEESEASSLS FDNKNSHSNE  240
AYSHSTNLCD SKGITFTGSG SKKVNFAEYG MEQEQFRREK SHHEIFQMLG SHNSPLRQID  300
LNDNVDFEEF LRHLTNDEQQ QLLKFLPPID AAKLPDGLKS LFDSPQFREN ITSFQQLLAE  360
GVFDMSFSGA KPEDCKVLKK LVLTNLSKSK WVEHLQLLKN PKNSSRGSSS ISGPNVAAST  420
NKRPQDNQNK KFPEVKIVMK SPKRVIMKGG YDKKEVIDNN DGSCFSPRSL FAASPDGGSF  480
LLDSINFVEE SSDQDLLLDV PSNGSFAQAE LLLPTISFGS QQASTSSSSI SPHHHAHP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104842.10.0GATA transcription factor 26
SwissprotQ8W4H11e-159GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2P5CU960.0A0A2P5CU96_PARAD; GATA transcription factor
STRINGXP_010104842.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-159GATA transcription factor 26