PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10298.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WOX
Protein Properties Length: 268aa    MW: 30176.6 Da    PI: 8.145
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10298.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-2197156357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t+eq+ +Le+l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  PK10298.1  97 TRWNPTQEQIGILETLYRGgMRTPNAQQIEQITAQLgkfgKIEGKNVFYWFQNHKARERQ 156
                7*****************99**************************************97 PP
2Wus_type_Homeobox116.71e-3797158465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L ++Gkie+kNVfyWFQN+kaRerqkq
          PK10298.1  97 TRWNPTQEQIGILETLYRGGMRTPNAQQIEQITAQLGKFGKIEGKNVFYWFQNHKARERQKQ 158
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-1392163IPR009057Homeodomain-like
PROSITE profilePS5007110.30192157IPR001356Homeobox domain
SMARTSM003896.1E-794161IPR001356Homeobox domain
CDDcd000862.39E-597158No hitNo description
PfamPF000463.7E-1997156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-898156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGGSMKVHQF ARGLWEAHEP SLTLGCKRLR PLAPKLQPNS PDSSNISSST TTTSPNSIAP  60
FDLKSFIRPE SGPRKLGSSL DHHKKDSSQV ETHPGGTRWN PTQEQIGILE TLYRGGMRTP  120
NAQQIEQITA QLGKFGKIEG KNVFYWFQNH KARERQKQKR NSLGLSHSPR TPTITTTNTN  180
TSTTTLHSVT VALETRLGGE YVVEREQEGC TSPYKRKCRS WGFECLVEDY SRLCYGNNEE  240
EEGEELWSFF PCTRKEDDDD HDAGVFGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010110805.11e-120WUSCHEL-related homeobox 4
SwissprotQ6X7J91e-70WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A2P5F8W21e-132A0A2P5F8W2_TREOI; Homeodomain transcription factor
STRINGXP_010110805.11e-119(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.16e-67WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]