PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK08477.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

S1Fa-like

Protein Properties

Length: 72aa MW: 7914.62 Da PI: 10.7779

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK08477.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	130.7	3.8e-41	8	72	6	70
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + kGln Glivl+vv glll+fl+gn+ily+yaqknlPP+kkkP+skkk+k+e+lkqGv++PGe PK08477.1 8 AKPKGLNGGLIVLIVVFGLLLMFLIGNFILYTYAQKNLPPKKKKPISKKKMKKERLKQGVSAPGE 72 4569************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	9.5E-38	8	72	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MDDSGVDAKP KGLNGGLIVL IVVFGLLLMF LIGNFILYTY AQKNLPPKKK KPISKKKMKK 60 ERLKQGVSAP GE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104121.2	2e-24	DNA-binding protein S1FA
Refseq	XP_024026346.1	2e-24	DNA-binding protein S1FA
Swissprot	Q7XLX6	4e-12	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	2e-23	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_010104121.1	4e-24	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]