PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02366.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 334aa MW: 37501.9 Da PI: 9.649

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02366.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.4	3.2e-54	28	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+++yL +k+++ ++++ ++i +vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++el PK02366.2 28 LPPGFRFHPTDEELITFYLINKISDPTFTA-RAIGDVDLNKSEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvTSEL 126 79***********************999.89***********99999************************************9989999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+grap+gek++Wvmheyr+ PK02366.2 127 VGMKKTLVFYRGRAPRGEKSNWVMHEYRI 155 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	26	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.359	28	176	IPR003441	NAC domain
Pfam	PF02365	7.7E-28	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
XQKEKEEIRR DMGGGSSDDN KVDTTEKLPP GFRFHPTDEE LITFYLINKI SDPTFTARAI 60 GDVDLNKSEP WELPAKAKMG EKEWYFFSLR DRKYPTGVRT NRATNTGYWK TTGKDKEIFN 120 SVTSELVGMK KTLVFYRGRA PRGEKSNWVM HEYRINSKSA FRTSKDEWVV CRVFQKSAGA 180 KKYPTTSTQT RTMNPYALID QTQTMLQYSS PMMQLPGDPT GHFLFARNNC NNITNNPHEL 240 AELSRVLRGT TSGSTNPLNI LPSQYNYPVP ILPGGGGGGC LTISGLNLNL GGPPPPQAPP 300 MQPNNNHHQP QIMNLNQQNI MSSNSGSFGH HDHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	24	182	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	24	182	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	24	182	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	24	182	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	24	182	16	174	NAC domain-containing protein 19
3swm_B	2e-55	24	182	16	174	NAC domain-containing protein 19
3swm_C	2e-55	24	182	16	174	NAC domain-containing protein 19
3swm_D	2e-55	24	182	16	174	NAC domain-containing protein 19
3swp_A	2e-55	24	182	16	174	NAC domain-containing protein 19
3swp_B	2e-55	24	182	16	174	NAC domain-containing protein 19
3swp_C	2e-55	24	182	16	174	NAC domain-containing protein 19
3swp_D	2e-55	24	182	16	174	NAC domain-containing protein 19
4dul_A	2e-55	24	182	13	171	NAC domain-containing protein 19
4dul_B	2e-55	24	182	13	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015885188.1	1e-134	NAC domain-containing protein 79 isoform X3
TrEMBL	A0A2P5DT54	1e-150	A0A2P5DT54_PARAD; NAC domain containing protein
STRING	evm.model.supercontig_244.7	1e-131	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-104	NAC domain containing protein 38