PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK01935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 27175.8 Da PI: 7.8541 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 127 | 177 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+t +Aaka++ a+ k++g PK01935.1 127 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTDVDAAKAYDCAAFKMRG 177 8********.**********9...6566**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 126 | 186 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.49E-30 | 126 | 185 | No hit | No description |
SMART | SM00380 | 2.4E-36 | 127 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 127 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.408 | 127 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 127 | 186 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.7E-13 | 128 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-13 | 167 | 187 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKEVEEFSAL ELIRQHLLGD FTSTDSFINT LNSQIVSENH YKTHKPIITT TTSSYHFQSV 60 KQEYSQSESE SNSPVPDNNP HQFLHLIMEP KSETDPLLDI PSPNNSNKKK KTTTMKKEED 120 HSGEMKHYRG VRRRPWGKFA AEIRDPNRKG SRVWLGTFDT DVDAAKAYDC AAFKMRGRKA 180 ILNFPLEAGL SDPPKNTGRT RKRRRRSSDQ EEEEEFPHSQ PEISFNSGGG DNQSWTX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-28 | 126 | 186 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 204 | RKRRR |
2 | 200 | 206 | RKRRRRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634663.1 | 4e-67 | ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | A0A2P5F3P4 | 7e-88 | A0A2P5F3P4_TREOI; AP2/ERF transcription factor | ||||
STRING | cassava4.1_015180m | 2e-66 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 7e-41 | ERF family protein |