PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025006m
Common NameCARUB_v10025006mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 354aa    MW: 37449.2 Da    PI: 10.1673
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025006mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.25e-37721742103
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++ +  + ++  +++  + 
  Carubv10025006m  72 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTTTNADPDSGDNP 165
                      57999***********************************************************999995553233333333333333333333 PP

              TCP  95 akskksqks 103
                      +k+k+++ s
  Carubv10025006m 166 MKKKRKRPS 174
                      333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3077155IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32778132IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MATIQKQEEV GVQDQSLRPV DLINGIRNVE TSRPFQVNPT VSLGPKPEPV MHMQAPPSIS  60
MSLAPPSSTG PPLKRASTKD RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW  120
LLENAEPAII AATGTGTVPA IAMSVNGTLK IPTTTNADPD SGDNPMKKKR KRPSNSEYID  180
INDAVTSSSG LAPITTPTTT TTIQQLPAPS TVAQQHLYPM WAIPSNAVIP TVGAFFLVPQ  240
MAGQSNQPQL LAFPAAASPS SYVAAVQQAS SMARPPPSHQ VYPGSGVSDI SGSNSSRTTS  300
VMAPSSSSGT TTGGSSSGAR TATHTLRDFS LEIYEKQELH QFMSSTTTRS SNH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10025006m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295876.10.0transcription factor TCP9
SwissprotO646471e-180TCP9_ARATH; Transcription factor TCP9
TrEMBLR0HGG10.0R0HGG1_9BRAS; Uncharacterized protein
STRINGCagra.0050s0132.1.p0.0(Capsella grandiflora)
STRINGXP_006295876.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-158TCP family protein