PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023746m
Common NameCARUB_v10023746mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 297aa    MW: 32113.8 Da    PI: 6.2531
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023746mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.66.1e-09546439
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     r C+ +++  ++lfC+ +  +lC  C +++H        H++
  Carubv10023746m  5 RLCDSCKSTAATLFCRADAAFLCGPCDSKIHTAnklasrHER 46
                     78******99*********************55667777776 PP
2zf-B_box25.23.4e-084992542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e+ +++  C+ +   lC +C   +H+       H+++p+
  Carubv10023746m 49 LCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplssrHERIPI 92
                     6*****************************66899999999886 PP
3CCT69.11.1e-23230273144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Carubv10023746m 230 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 273
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.879249IPR000315B-box-type zinc finger
SMARTSM003363.2E-14249IPR000315B-box-type zinc finger
PfamPF006439.0E-7547IPR000315B-box-type zinc finger
CDDcd000213.59E-8547No hitNo description
PROSITE profilePS5011911.0074592IPR000315B-box-type zinc finger
PfamPF006431.3E-64992IPR000315B-box-type zinc finger
CDDcd000213.45E-84992No hitNo description
SMARTSM003366.9E-115092IPR000315B-box-type zinc finger
PfamPF062031.2E-17230272IPR010402CCT domain
PROSITE profilePS5101716.658230272IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MASSRLCDSC KSTAATLFCR ADAAFLCGPC DSKIHTANKL ASRHERVYLC EVCEQAPAHV  60
TCKADAAALC VTCDRDIHSA NPLSSRHERI PITPFHDSVS GSVKSASSFV NDDDDDDGEA  120
ASWLLPKEGG ETEISNFFTD LEYPKIEVTS EENSSGNDGV VPINNKLVFL NNDYFNIDIS  180
ASKGFSFINQ SDLSRSLDVA LVPESGGGAT TATATATVTM PVVQLSPAER EARVLRYREK  240
RKNRKFEKTI RYASRKAYAE MRPRIKGRFA KRTESRGDDG GGDGGVYGGF GVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023746m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294708.10.0zinc finger protein CONSTANS-LIKE 3
SwissprotQ9SK531e-155COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLR0FXZ60.0R0FXZ6_9BRAS; Uncharacterized protein
STRINGXP_006294708.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-144CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]