PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023614m
Common NameCARUB_v10023614mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 329aa    MW: 36890.9 Da    PI: 9.5511
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023614mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-17108157155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Carubv10023614m 108 SNYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIKFRG 157
                      57*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-15108165IPR016177DNA-binding domain
PfamPF008472.2E-9108157IPR001471AP2/ERF domain
PROSITE profilePS5103216.845109165IPR001471AP2/ERF domain
CDDcd000185.20E-24109164No hitNo description
SMARTSM003803.3E-29109171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-16109164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLDLNLKILS THNEDEEDCK VPTASIFNQE KEDDSIDPSA NKLSLITFGI LKRKEDVEAI  60
PMPPPPPPES GLSGAGSEWL NLSPMQGNKQ EMLVMKKKSR RGPRSRSSNY RGVTFYRRTG  120
RWESHIWDCG KQVYLGGFDT AYTAARAYDR AAIKFRGLQA DINFIVDDYK QDFEKMKNLS  180
KEEFVQTLRR ASASLARGGS KYKNNYMKND YIHLFQNRQW NASAAKCNEI RKIEAGEIKL  240
GAHHNKGNEH KDLDLSLGIS STPKNITLKP SADYYMGLNR SATSLYGKAL PVYLPITEMK  300
PLKTVVASSG FPFIAMINSS SLSNCFDP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023614m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294578.10.0AP2-like ethylene-responsive transcription factor SNZ
SwissprotQ6PV671e-170SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ
TrEMBLR0FXN00.0R0FXN0_9BRAS; Uncharacterized protein
STRINGXP_006294578.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-157AP2 family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li W,Wang T,Zhang Y,Li Y
    Overexpression of soybean miR172c confers tolerance to water deficit and salt stress, but increases ABA sensitivity in transgenic Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(1): p. 175-94
    [PMID:26466661]
  4. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]