PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10023307m
Common NameCARUB_v10023307mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 415aa    MW: 46022.3 Da    PI: 7.4187
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10023307mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.6e-06846537
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ ++e  + lfC+ ++  lC  C ++ H+       H
  Carubv10023307m  8 ACDFCGERTAVLFCRADSAKLCLPCDQHVHSAnllsrkH 46
                     6******99*******************99555565556 PP
2zf-B_box23.11.5e-074991339
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      ++C+++++++++  C++++  lC++C    H +      H++
  Carubv10023307m 49 SQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGScssaaaHER 91
                     689************************9988844667777765 PP
3CCT652.2e-22369412144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a++RYkeK+ktR+++K+irYe+RKa+Ae+R RvKGrFvk++
  Carubv10023307m 369 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKAT 412
                      899***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741451IPR000315B-box-type zinc finger
SMARTSM003361.3E-12451IPR000315B-box-type zinc finger
CDDcd000216.29E-9739No hitNo description
PROSITE profilePS501199.34794IPR000315B-box-type zinc finger
CDDcd000218.99E-75180No hitNo description
SMARTSM003361.65294IPR000315B-box-type zinc finger
PROSITE profilePS5101714.852369411IPR010402CCT domain
PfamPF062031.2E-16369411IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGSSTTVACD FCGERTAVLF CRADSAKLCL PCDQHVHSAN LLSRKHVRSQ ICDNCSKEPV  60
SVRCFTDNLV LCQECDWDVH GSCSSAAAHE RSAVEGFSGC PCVSELAAVW GIDLEGKKKE  120
EEREEERLTE NFGMALDSWV SGSNIVQDLI VPYDTPMKKQ SFSLGRSKQV VYRQLEELLK  180
RDFVSCEGDG DGDGRGEIMI REGINGGSNM SQLSPTTSFT SLLLSTEYQS SCGNAATQWN  240
AASHTTDQKA HNTQIWDFNL GKSRNPEEPS PVEPKGSTFT LNNATHIKND TTNVKALRDS  300
YQDDCIRSSS TKGQEISKSN NVPAAIHSHK SSNNSSDLHF TEHVVIPSTK TTRLVAATNA  360
DLERMAQNRD NAMQRYKEKK KTRRYDKTIR YETRKARAET RLRVKGRFVK ATDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10023307m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294300.10.0zinc finger protein CONSTANS-LIKE 14 isoform X2
SwissprotO228000.0COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLR0HT150.0R0HT15_9BRAS; Uncharacterized protein
STRINGXP_006294300.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.20.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]