PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10019280m

Common Name

CARUB_v10019280mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 255aa MW: 26606.5 Da PI: 8.332

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10019280m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.9	4.7e-38	26	85	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++P+Ggg+rk k+ Carubv10019280m 26 QQEQLPCPRCDSNNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGTRKGAKR 85 68999***************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	4	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MPTSDSGESR RIAMKPHGVT APNTEQQEQL PCPRCDSNNT KFCYYNNYNF SQPRHFCKAC 60 RRYWTHGGTL RDIPIGGGTR KGAKRSRTCS SNSASSVSAV NSVVSTANGV RCVTPVLFPQ 120 SNGATHSVNA PLDSDAKGSA LSLCGSFTSL LNHNAAATAT HGSGSVIGLG GFGIGLGSGY 180 DDVGFGLGRA MWPFSTVCDA ATTNVGSNGG HHVVQMPATW QFEGLESNVS GGFVSGEYFA 240 WPDLSITTPG NSLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10019280m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132976	1e-112	AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.
GenBank	AL133363	1e-112	AL133363.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T20E23.
GenBank	CP002686	1e-112	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293003.1	0.0	dof zinc finger protein DOF3.4
Swissprot	Q39088	1e-126	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	R0FTS8	0.0	R0FTS8_9BRAS; Uncharacterized protein
STRING	XP_006293003.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-127	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Carubv10019280m
Entrez Gene	17885958

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]