PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018526m
Common NameCARUB_v10018526mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 339aa    MW: 37731.6 Da    PI: 9.7235
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018526mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-18123172155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Carubv10018526m 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 172
                      78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-15123180IPR016177DNA-binding domain
PfamPF008471.8E-9123172IPR001471AP2/ERF domain
PROSITE profilePS5103217.332124180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-16124179IPR001471AP2/ERF domain
SMARTSM003801.6E-29124186IPR001471AP2/ERF domain
CDDcd000183.86E-11124179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009658Biological Processchloroplast organization
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLDLNLKIFS SCDEDQDRKV PLMISTKGEE ESNSSLSSST ASAAGDAFIT FGILKRDEDV  60
APPPPPPPPT THKETGDLFP VADARRNIDI SVEDSHWLNL SSLQRNTHKI VKKSRRGPRS  120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAYAAA RAYDRAAIKF RGLDADINFV  180
VDDYRHDIDK MKNLNKVEFV QTLRRESASF GRGSSKYKGL ALQKCTQFKT HHDQIHLFQN  240
RGWDAAALKY NELGKGEGGM KFGAHIKASE TMKLTTGDYY KGINWSTMGL FGKQSSIYLP  300
MTTTTTTMKP LKTVAASSGF PFISMTTSSS SVSTCFDP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00075ChIP-chipTransfer from AT3G54990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018526m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762750.0AY576275.1 Arabidopsis thaliana AP2 domain transcription factor (SMZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292315.10.0AP2-like ethylene-responsive transcription factor SMZ isoform X2
SwissprotQ6PV681e-174SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBLR0HMN90.0R0HMN9_9BRAS; Uncharacterized protein
STRINGXP_006292315.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.11e-159AP2 family protein
Publications ? help Back to Top
  1. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]