PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016104m
Common NameCARUB_v10016104mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 436aa    MW: 49665.2 Da    PI: 6.9915
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016104mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.11e-22111213186
         trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 
                      +Wt+ +v++Li a+ +++++ + +                 +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ ++++++
  Carubv10016104m 111 KWTDTMVRLLIMAVFYIGDEAGLNDpidvkkksggggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiACRVVE 204
                      7**************88888886544555667788888899**********************************************89***** PP

         trihelix  78 tcpyfdqle 86 
                      +  ++++++
  Carubv10016104m 205 NQGLLESMD 213
                      **9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-20109239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MESNVMFSGF SPRMLSLEMP QNPQNPQNSV QFQHPHPYTS TSADQQTQPP MIKPLYPYAS  60
APPSKPKQLS PMSGCNGDDE DRGSGSGSGC NPDDSAGTDG KRKLSQWHRM KWTDTMVRLL  120
IMAVFYIGDE AGLNDPIDVK KKSGGGGGGM LQKKGKWKSV SRAMVEKGFS VSPQQCEDKF  180
NDLNKRYKRV NDILGKGIAC RVVENQGLLE SMDHLTPKLK DEVKKLLNSK HLFFREMCAY  240
HNSCGHLGGH DQPPQQSPVT IPVQQNCFHA AEAGKMARIA EREEAEEDVE SDMAEDSESE  300
MEESEEEEEE VEETTKKKRR VLTTAVKRLR EEAARVVEDV GKSVWEKKEW MRRKMLEIEE  360
KKIGYEWEGV EMEKQRVKWM RYRSKKEREM EKAKLDNQRR RLETERMVLM LRRSEIELNE  420
LQSSGKRVDP CSATG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315319KKKRR
2315320KKKRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016104m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299896.10.0uncharacterized protein LOC17891806
TrEMBLR0HSJ60.0R0HSJ6_9BRAS; Uncharacterized protein
STRINGXP_006299896.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors