PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014042m
Common NameCARUB_v10014042mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 361aa    MW: 39714.7 Da    PI: 6.9962
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014042mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.61.6e-3271180289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 
                       g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak +i+el+ ++ s+++++  ++++s  + ++   +     
  Carubv10014042m  71 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKDEIDELPPLPISPENFSlvNHHQSFLNLGQRPGQdptql 164
                      689*************************************************************999999887666666655554333356666 PP

              TCP  89 ...............k 89 
                                      
  Carubv10014042m 165 gfkinggcvqaetttT 180
                      6667666664433220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.25273131IPR017887Transcription factor TCP subgroup
PfamPF036349.6E-2973150IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNIVSWKDAN DEVSGARDTR RREGDVEEDK EEEEAQVRGT GGKTVITKPP TSSSSWMKSK  60
DPRIVRVSRA FGGKDRHSKV CTLRGLRDRR VRLSVPTAIQ LYDLQERLGV DQPSKAVDWL  120
LDAAKDEIDE LPPLPISPEN FSLVNHHQSF LNLGQRPGQD PTQLGFKING GCVQAETTTT  180
SSREVNNKER GDNDVVFTNN HHIGSYGTYH NMEHHHHHHH QHLSFQADNH QLHSLVPFPS  240
QILVCPMTTS TTTTTIQSLF PSSSSAGSAN METVDPRQMA SHFHMPLMGN SNSSSSSQNI  300
STLYSLLHGS GGGNNGGRDI DNRMSSSVQF NRDNTTSAAN MSKLLGSESS STSRGSEHHM  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1978132155Putative transcription factor PCF6
5zkt_B2e-1978132155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014042m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297997.10.0transcription factor TCP13
SwissprotQ9S7W50.0TCP13_ARATH; Transcription factor TCP13
TrEMBLR0HZ820.0R0HZ82_9BRAS; Uncharacterized protein
STRINGXP_006297997.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-161plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]