PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009230m
Common NameCARUB_v10009230mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 425aa    MW: 47444.1 Da    PI: 4.8403
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009230mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-081356340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + +++++C  ++ +lC++C +  H+       H++v
  Carubv10009230m 13 ARACDSCVKRRARWYCAADDAFLCQSCDSLVHSAnplarrHERV 56
                     578*****************************657888888876 PP
2CCT67.43.8e-23365408144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Carubv10009230m 365 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 408
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.0E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8081158IPR000315B-box-type zinc finger
PfamPF006433.5E-71356IPR000315B-box-type zinc finger
CDDcd000213.90E-101458No hitNo description
PfamPF062037.1E-18365407IPR010402CCT domain
PROSITE profilePS5101716.083365407IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MKSLANAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD SLVHSANPLA RRHERVRLKT  60
ASPAAAKHSN HSPSASPPHG AATWHHGFTR KARTPRGSAG KKNNLSTFHD LVPEISVEDQ  120
TDSYELELEE QLICQVPVLD PLVAEQFLND VVEPKIEFPM IRSGVLIDEE EDNAESCLNG  180
FFPTDMELEE FAADVETLLG RGLETESYAM EDLGFSNTEM FKVEKDEIEE EEVEDIKAIN  240
MEIFDDDRKD VDGTVPFELT FDYESSHKTA EEEEIKNVES SGECVVKVKE EEGKNVLMLR  300
LNYDSVISTW GGQGQPWTSG EPPELDIDIS SWPPVSMGET KGDLSHQKQY VSVCLPSSGF  360
GDGGREARVS RYREKRRTRL FSKKIRYEVR KLNAEKRPRM KGRFVKRAAL AVSAAANSPL  420
GVNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375391RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009230m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307606.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLR0IDF30.0R0IDF3_9BRAS; Uncharacterized protein
STRINGXP_006307606.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]