PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006202m
Common NameCARUB_v10006202mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 334aa    MW: 37116.7 Da    PI: 5.7771
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006202mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-07444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ ++ +++ ++C++++  lC +C ++ H+       Ht+
  Carubv10006202m  4 QCDYCGTEKALIYCKSDSARLCLNCDVNVHSAnplsqrHTR 44
                     7******99*********************65777777875 PP
2CCT60.27e-21279322144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R++a++RYk+K+++R F K+irY+sRKa+A++R+RvKGrFvk+ 
  Carubv10006202m 279 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKAG 322
                      99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.2E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.655147IPR000315B-box-type zinc finger
PfamPF006432.4E-6444IPR000315B-box-type zinc finger
CDDcd000213.61E-7547No hitNo description
PROSITE profilePS5101714.356279321IPR010402CCT domain
PfamPF062034.0E-16279321IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDAQCDYCGT EKALIYCKSD SARLCLNCDV NVHSANPLSQ RHTRSFLCEK CFLQPTAIHC  60
LNEKVSLCQG CQWNASNCTG LGHILQNLNP YSGCPSPSDF TKVWSSNSEP SVSNWVSPFD  120
DCTKINELVD WDGLSASMIT QTQNLKENSI LFMESNLPKV IEEECSGLDL CEGINLDDAP  180
LNFNASNYII GCPSPDQTKC YKYEGSSYKE DNNNIDLSSL FLPALSGGNV VPSMSLSMSN  240
ITRESSTTDY QDCGISPGFL IGDSPWESSA EVSYNPKSRD EAKKRYKQKK SKRMFGKQIR  300
YASRKARADT RKRVKGRFVK AGENFEYDPS LIM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006202m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284906.10.0putative zinc finger protein CONSTANS-LIKE 11
SwissprotO233790.0COL11_ARATH; Putative zinc finger protein CONSTANS-LIKE 11
TrEMBLR0GLP70.0R0GLP7_9BRAS; Uncharacterized protein
STRINGXP_006284906.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15250.10.0B-box type zinc finger protein with CCT domain