PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10005241m
Common NameCARUB_v10005241mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 325aa    MW: 34294.3 Da    PI: 6.7258
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10005241mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.88.1e-70892482154
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsals 87 
                      rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s    +          ++ +kr+r++ +  + ++s
  Carubv10005241m  89 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGDGAGsgsggvggGSSIPKRHRDT-TLPAGTSS 181
                      67899***************************************************99887655546789999999999999997.77788889 PP

           DUF702  88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                      s++l+s ++  e+  +s+P evss+a+frcv++s+vddg+ ++aYqt+v+igGh+fkGiLydqG+e+
  Carubv10005241m 182 SSRLPSDSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGDGQYAYQTTVNIGGHLFKGILYDQGPES 248
                      999**************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.2E-6392247IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.2E-2794136IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.101.6E-4123182No hitNo description
TIGRFAMsTIGR016242.1E-29199246IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGIFSLGGN NNNNNGDQEE ENQQQQKTNW VWYRSNANAT NINPGSSQQI WQIPPEQMLM  60
HHHPHPQQQS LDLYPGHQID VSDLATSSRS ITISCRDCGN QAKKDCTHMR CRTCCKSRGF  120
DCSTHVRSTW IPVARRRERQ QQLHMSTSGG DGAGSGSGGV GGGSSIPKRH RDTTLPAGTS  180
SSSRLPSDSA GLEMGEASFP GEVSSDALFR CVKMSGVDDG DGQYAYQTTV NIGGHLFKGI  240
LYDQGPESSY MSAGSGGSDH QSSSAGGGGG GGNPFNPPIV ADGGGGGSSA MFVDPNSGGY  300
YSSNMTTSVF MPPGTQFYQN PPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10005241m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221410.0AL022141.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E13 (ESSAII project).
GenBankAL1615890.0AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284108.10.0protein SHI RELATED SEQUENCE 2
SwissprotO655171e-170SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLR0F6A60.0R0F6A6_9BRAS; Uncharacterized protein
STRINGXP_006284108.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-152Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]