PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10001541m

Common Name

CARUB_v10001541mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 308aa MW: 33283.9 Da PI: 9.991

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10001541m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.2	5.9e-38	77	202	3	136
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s a++++ + Carubv10001541m 77 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRG--------ANSTSLS 162 79*************************************************************9999977722222222........2222223 PP TCP 97 skksqksaasalnlakesrakarararertrekmriknkl 136 s+ ++k++++ l + +r ra e ++ +++ +n++ Carubv10001541m 163 SSLDHKPTTTLLGSSSPFILGKRVRADEDSHHNNSSSNSN 202 3333333333333333333333333333222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	82	136	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.2E-33	82	203	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDKQKLPSSS FSSSIICFSF SLTVISQVRR EHTHKTKPQI EEELTMSNNN NNDVGVMISS 60 NGSALIEQQQ QQSPVVVKKP PAKDRHSKVD GRGRRIRMPI ICAARVFQLT RELGHKSDGQ 120 TIEWLLRQAE PSIIAATGTG TTPASFSTAS VSIRGANSTS LSSSLDHKPT TTLLGSSSPF 180 ILGKRVRADE DSHHNNSSSN SNNNGSGGNN KDETFTTAPG GFWAVPARPD FGQVWSFTGG 240 VPQEMFLQQQ HHHHQQPLFV HQQQQQQAAM GEASAARVGN YLPGHLNLLA SLSGGSPGSG 300 RREDDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10001541m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007648	1e-112	AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBank	AK118679	1e-112	AK118679.1 Arabidopsis thaliana At5g23280 mRNA for unknown protein, complete cds, clone: RAFL19-95-A03.
GenBank	CP002688	1e-112	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636329.1	0.0	transcription factor TCP7
Swissprot	Q9FMX2	1e-130	TCP7_ARATH; Transcription factor TCP7
TrEMBL	R0H8F7	0.0	R0H8F7_9BRAS; Uncharacterized protein
STRING	XP_006288297.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-83	TCP family protein

Link Out ? help Back to Top
Phytozome	Carubv10001541m
Entrez Gene	17882820