PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7865_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 287aa    MW: 32119.1 Da    PI: 8.9029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7865_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18105155256
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                           y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  cra_locus_7865_iso_1_len_1405_ver_3 105 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 155
                                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.28E-16104164No hitNo description
SMARTSM003802.1E-36105168IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22105163IPR016177DNA-binding domain
PROSITE profilePS5103223.235105162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-31105163IPR001471AP2/ERF domain
PfamPF008471.1E-12106155IPR001471AP2/ERF domain
PRINTSPR003674.5E-10106117IPR001471AP2/ERF domain
PRINTSPR003674.5E-10128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MERIQENTIF GDGVSVSSSL SHLILNGGSS NTLDSIFSYC QQSNFSSNSV FEPLGSSVYL  60
RQKDMLQKFS EENRAIPSIS RTCMNKNNNP FQNSISFLNP SKKKLYRGVR QRHWGKWVAE  120
IRLPQNRMRV WLGTYETAEA AAYAYDRAAY KLRGEYARLN FPNLLDPSKL GFGDSSRLNA  180
LKNAVDAKIQ AICQKVKREK KAAQKNSKKS AKTCSNLEEE NEEKVTKIDS STSSSPSVSE  240
DGFWKPENSA STGEFASGGM VGLEFEDCSL ARMPSFDPEL IWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21104162160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-21101162163ATERF1
3gcc_A9e-21101162163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080307.11e-117ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W25e-71ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A068UWZ51e-114A0A068UWZ5_COFCA; Uncharacterized protein
STRINGXP_002509951.11e-106(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]