PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_778_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 1034aa MW: 113451 Da PI: 5.5943

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_778_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	621	672	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ cra_locus_778_iso_2_len_3499_ver_3 621 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 672 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.632	611	692	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	624	672	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.25E-23	931	1018	No hit	No description
SMART	SM00666	1.1E-26	932	1014	IPR000270	PB1 domain
Pfam	PF00564	3.2E-19	932	1013	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-26	932	1013	No hit	No description
PROSITE profile	PS51745	24.855	932	1014	IPR000270	PB1 domain
CDD	cd06407	4.66E-38	933	1013	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MAEPEEPEQQ HQHQKFLHPH PRSMEILTSF QHQPPAERDN IMMDLDLDLD SSWTFDQIFS 60 AAAAAATTTN NNSTSSFLLS TTSEQPCSPL WAFSDENNED KPSGNSTTAL GLRLSDYPRL 120 VNCNNDSITG NPSRNDEKRR FTTPLLELAA LDYPDASCII KERMTQALRF FKDSTESHVL 180 AQVWAPVKNG GRCVLTTSGQ PFVLDPKSNG LYQYRMVSLM YVFSVDGETN GVLGLPGRVF 240 RQKLPEWTPN VQYYSSEEFP RLNHALHYNV RGTLALPVFE PSGQNCIGVL ELIMTSQKIN 300 YAPEVDKVCK ALXASLQAVN LKSSEILDHS NVQICNEGRQ NALAEILEIL TVVCETHKLP 360 LAQTWVPCQH RSVLANGGGL RKTCSSFDGS CMGQVCMSTT DVAFYVVDAH MWGFREACAE 420 HHLQKGQGVA GRAFESHNSC FCTDVTQFCK NDYPLVHYAR MFGLTSCFAI CLRSSYTGDD 480 DYVLEFFLPS IVLDHGDQQT LLDSLLVTMK PHLGSLRIAS GKDLEHEWRS IEIVKSLVEE 540 KFDSRAEVFQ RTRSSTSPPG PTAFTNGEMV HLNSMAEQRS ALVDSANDER HSGATAGHQS 600 TASVVENKET GKKTERKRGK AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG 660 ISRWPSRKIN KVNRSLTKLK RVIESVQGAE GAFTLTSLAA SSIPVAVGSV PWTAGGLNES 720 SPQDQPGSGP SEFPGDRNDE SPLPGSGSDG KAETSNQLLG GGTGENEEHV SKSAHFLPCE 780 GSHRSKTQSG SREESAGTPT SQGSCQGSPY IGNESSPRNE LVVSPSQEQL MKVGGSMEFR 840 YQPTGAINLS AAFSMDAFMN VQHQEPFGGM LVEDAGSCHD LKNLCSNGDA LFDERLPDYS 900 WNNPPSSEPI PKGSTTPADR MPQFSARPEL KTITIKATYR EDIIRFRLPL DSGIDKLKEE 960 IAKRLKLDVG TFEIKYLDDD HEWVLIACDA DLQECVDISK SSGSNMIRLL VHDLMPALGS 1020 SCESSGECGG LGCK

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MAEPEEPEQQ HQHQKFLHPH PRSMEILTSF QHQPPAERDN IMMDLDLDLD SSWTFDQIFS  60
AAAAAATTTN NNSTSSFLLS TTSEQPCSPL WAFSDENNED KPSGNSTTAL GLRLSDYPRL  120
VNCNNDSITG NPSRNDEKRR FTTPLLELAA LDYPDASCII KERMTQALRF FKDSTESHVL  180
AQVWAPVKNG GRCVLTTSGQ PFVLDPKSNG LYQYRMVSLM YVFSVDGETN GVLGLPGRVF  240
RQKLPEWTPN VQYYSSEEFP RLNHALHYNV RGTLALPVFE PSGQNCIGVL ELIMTSQKIN  300
YAPEVDKVCK ALXASLQAVN LKSSEILDHS NVQICNEGRQ NALAEILEIL TVVCETHKLP  360
LAQTWVPCQH RSVLANGGGL RKTCSSFDGS CMGQVCMSTT DVAFYVVDAH MWGFREACAE  420
HHLQKGQGVA GRAFESHNSC FCTDVTQFCK NDYPLVHYAR MFGLTSCFAI CLRSSYTGDD  480
DYVLEFFLPS IVLDHGDQQT LLDSLLVTMK PHLGSLRIAS GKDLEHEWRS IEIVKSLVEE  540
KFDSRAEVFQ RTRSSTSPPG PTAFTNGEMV HLNSMAEQRS ALVDSANDER HSGATAGHQS  600
TASVVENKET GKKTERKRGK AEKTISLEVL QQYFAGSLKD AAKSLGVCPT TMKRICRQHG  660
ISRWPSRKIN KVNRSLTKLK RVIESVQGAE GAFTLTSLAA SSIPVAVGSV PWTAGGLNES  720
SPQDQPGSGP SEFPGDRNDE SPLPGSGSDG KAETSNQLLG GGTGENEEHV SKSAHFLPCE  780
GSHRSKTQSG SREESAGTPT SQGSCQGSPY IGNESSPRNE LVVSPSQEQL MKVGGSMEFR  840
YQPTGAINLS AAFSMDAFMN VQHQEPFGGM LVEDAGSCHD LKNLCSNGDA LFDERLPDYS  900
WNNPPSSEPI PKGSTTPADR MPQFSARPEL KTITIKATYR EDIIRFRLPL DSGIDKLKEE  960
IAKRLKLDVG TFEIKYLDDD HEWVLIACDA DLQECVDISK SSGSNMIRLL VHDLMPALGS  1020
SCESSGECGG LGCK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027085451.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A068UUL3	0.0	A0A068UUL3_COFCA; Uncharacterized protein
STRING	XP_009605047.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]