PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_67665_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 198aa    MW: 21687.3 Da    PI: 9.4511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_67665_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.9e-214595256
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  cra_locus_67665_iso_1_len_592_ver_3 45 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDKAAYKLRGE 95
                                         59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.19E-3444104No hitNo description
SMARTSM003809.8E-3845108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-3345103IPR001471AP2/ERF domain
PROSITE profilePS5103223.16945102IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2345103IPR016177DNA-binding domain
PRINTSPR003671.8E-114657IPR001471AP2/ERF domain
PfamPF008472.5E-144695IPR001471AP2/ERF domain
PRINTSPR003671.8E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
XNPISIPAPA TNPVPKSQTE PILELSRPEA RPDEAAGTLP NPVKLYRGVR QRHWGKWVAE  60
IRLPKNRTRL WLGTFETAEE AALAYDKAAY KLRGEFARLN FPHLKHQLCL DSDKFNPLPS  120
SVDAKLKTIC QNLQKQGNSR KPCSGSDQKA EILMKTGANE LKASSSNGLN YAGMIENVKV  180
EEASISSASS PSDDSSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2244102160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022876599.11e-68ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A2G9HN351e-60A0A2G9HN35_9LAMI; Uncharacterized protein
STRINGEOX921512e-57(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136