PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_38345_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 457aa    MW: 51450.4 Da    PI: 5.4821
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_38345_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19218268256
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  cra_locus_38345_iso_1_len_2151_ver_3 218 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 268
                                           59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.75E-33217277No hitNo description
SMARTSM003808.0E-40218281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-32218276IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23218276IPR016177DNA-binding domain
PROSITE profilePS5103222.998218275IPR001471AP2/ERF domain
PfamPF008472.7E-12219268IPR001471AP2/ERF domain
PRINTSPR003678.2E-11219230IPR001471AP2/ERF domain
PRINTSPR003678.2E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MASPRKSGKS KKVVVEEEAQ NTAQMDWERI NQGKEFDFEL ERQQQWRPVF DEASISNRPF  60
KKIKSPERQE SPFQSSSSSS TSSRHVFPFA FDGNQQSMEI LHQFTSSTSP LFRPIQQNEQ  120
QMISFAPQYY QQNQQGFSFP PYFAGEESAA AAAAIVSSQP HHHQHQQQQL LQYWSDALNL  180
SPRGRMMMMM NNNRFGQNQE NRNLFRPTTI QPINTTKLYR GVRQRHWGKW VAEIRLPRNR  240
TRLWLGTFDT AEDAAMAYDR EAFKLRGENA RLNFPELFLG KDKPTPAPAA SSSSSDPSHE  300
NLSSNRQPKQ PEKAPEGLNF PGSSSIELPE SSGPRGTSEG ENPDEDSGLG SSEITASEEI  360
HQTNSAAGAG ADSSSEFMWG DMAEAWLNAI PAGWGPGSPV WDDLDSTNNL ILPSNLPFTN  420
FHQQQQDSLK TQENTANSTS TSSSSYPLKP FFWKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20217275160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027061234.11e-177ethylene-responsive transcription factor ERF054-like
RefseqXP_027063932.11e-177ethylene-responsive transcription factor ERF054-like
TrEMBLA0A068V2H91e-175A0A068V2H9_COFCA; Uncharacterized protein
STRINGEOX993821e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136