PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2950_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 288aa    MW: 32713.8 Da    PI: 7.1758
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2950_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.94.9e-34157214259
                                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                          +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  cra_locus_2950_iso_1_len_1595_ver_3 157 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHNHH 214
                                          8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-35141216IPR003657WRKY domain
SuperFamilySSF1182903.01E-29149216IPR003657WRKY domain
PROSITE profilePS5081131.996151216IPR003657WRKY domain
SMARTSM007741.2E-39156215IPR003657WRKY domain
PfamPF031066.9E-27157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSDNHENDID GYSSYNPFYY ETSTTAFPFF GGDYTQQQGS SSSYDLSNSS SSFMSFTECL  60
QGSASDYNTL SGAFDHISEA IINDTDNFKD IHHQPPPDPP PTAQSSKSNS TTTTKGCEND  120
QDDKSKKLSK LPRKKGEKKQ REPRFAFTTK SEIDHLEDGY RWRKYGQKAV KNSPFPRSYY  180
RCTSQKCSVK KRVERSFQDP SIVITTYEGQ HNHHCPATLR GNAAAMIMSS SSSFPSPGFS  240
HNHHQDLLNI PQIPSPYYQT LNQQQQQLPD HYGLFQNMIP PFMHKQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-261492171078Probable WRKY transcription factor 4
2lex_A8e-261492171078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063441.19e-82WRKY transcription factor 71-like
SwissprotQ93WV49e-56WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A068UCE82e-79A0A068UCE8_COFCA; Uncharacterized protein
STRINGXP_008447132.14e-72(Cucumis melo)
STRINGXP_010275648.17e-72(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]