PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15704_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 529aa    MW: 57517 Da    PI: 8.4493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15704_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-105072527
                                          --SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                                           C +++rtG C yG++C+++H++
  cra_locus_15704_iso_3_len_2336_ver_3 50 DCVYYMRTGSCGYGAKCRYNHPR 72
                                          69*******************96 PP
2zf-CCCH31.62.8e-10158178727
                                           SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                                           ++++rtGtCk+G++CkF+H++
  cra_locus_15704_iso_3_len_2336_ver_3 158 QYYLRTGTCKFGATCKFHHPR 178
                                           59*****************96 PP
3zf-CCCH36.39.5e-12200224327
                                           S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                           +++C+++++tG+Ck+G +CkF+H++
  cra_locus_15704_iso_3_len_2336_ver_3 200 EKECSYYLKTGQCKFGITCKFHHPQ 224
                                           689********************97 PP
4zf-CCCH36.86.8e-12353379127
                                           --S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                           +++++C++++++G CkyG++Ck++H+p
  cra_locus_15704_iso_3_len_2336_ver_3 353 PGQPECQYYLKNGDCKYGSSCKYHHPP 379
                                           5789*********************97 PP
5zf-CCCH27.17.2e-09401425327
                                           S---SGGGGTS--TTTTT-SS-SSS CS
                               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                           +  C+f+++ G+Ck+G +CkF H++
  cra_locus_15704_iso_3_len_2336_ver_3 401 MQSCSFYLQKGHCKFGQNCKFDHPM 425
                                           567********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7374573IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-54572IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-75072IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-55172IPR000571Zinc finger, CCCH-type
SMARTSM003560.72156178IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8158178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.521158179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4159178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6197225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427197225IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4199224IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9200224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4203223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.342352380IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6352379IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9354379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5356380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4358378IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-5398425IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389398426IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6400425IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6400428IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4404423IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MELYGRGAAK IGSGQNPNAE WVPETGLEEP LSKLGLWGRE AYPERSGVLD CVYYMRTGSC  60
GYGAKCRYNH PRDRGSVGGA VLIGGAEYEY PERIGEPECQ VLCFQFLKEX FIYVHQLIIF  120
MVYKQLACVG EHTFSYALKC FLFPTLNCNS LILVDHVQYY LRTGTCKFGA TCKFHHPRNA  180
GGSLINVPLN IYGYPLRMGE KECSYYLKTG QCKFGITCKF HHPQPAGTSV PATARPFYPT  240
VQSASAPLEQ FGAASSGYRV QRPPLLTSSY LPGAYGAVLL HAGMVPIPNW SPYAGAINHT  300
FSPGSQSAAG ATSLYGVSQF ASSPPGVSGH YPSFPTSGTL GSKQKDRNFP ERPGQPECQY  360
YLKNGDCKYG SSCKYHHPPD WVVTKTYGLL SPLGLPLRPG MQSCSFYLQK GHCKFGQNCK  420
FDHPMGTLEY SPSASSLTDI PIASYMLSSS AMVATVSFPE LQADFISGTK LGASTIKDQP  480
YGSSLTSSVG LVISRSGPFS LSTVQISSQS SNSNIARNKR EDGEVHHPG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116904.11e-172zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-130C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A068U7E01e-171A0A068U7E0_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000136471e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034