PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_14162_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 739aa    MW: 83569.9 Da    PI: 8.4848
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_14162_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08555596240
                                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
                       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                                           ++W++eE ell ++ +++++g   +W+ I++++g+gR+ +++
  cra_locus_14162_iso_1_len_2425_ver_3 555 KPWSKEEIELLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 596
                                           58***********************************99876 PP
2Myb_DNA-binding27.86.1e-09681725345
                                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                                            W++  +  l++a k ++++   +W+++a+ ++ g+t +qck ++ 
  cra_locus_14162_iso_1_len_2425_ver_3 681 TWSAVQERALIQALKTFPKEtnqRWERVAAAVP-GKTVNQCKKKFT 725
                                           7********************************.*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006255.5E-8175193IPR001623DnaJ domain
SuperFamilySSF465653.53E-19180269IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.5E-19189290IPR001623DnaJ domain
SMARTSM002712.9E-13190265IPR001623DnaJ domain
PROSITE profilePS5007617.999191273IPR001623DnaJ domain
CDDcd062572.27E-12191262IPR001623DnaJ domain
PfamPF002265.3E-16191270IPR001623DnaJ domain
PRINTSPR006255.5E-8214229IPR001623DnaJ domain
PRINTSPR006255.5E-8245265IPR001623DnaJ domain
PROSITE patternPS006360250269IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.3E-5548596IPR009057Homeodomain-like
SuperFamilySSF466896.5E-8552597IPR009057Homeodomain-like
PROSITE profilePS512936.996552607IPR017884SANT domain
SMARTSM007173.1E-7553606IPR001005SANT/Myb domain
PfamPF002493.3E-7555596IPR001005SANT/Myb domain
CDDcd001671.15E-5556596No hitNo description
PROSITE profilePS512939.347677732IPR017884SANT domain
SMARTSM007171.6E-10678730IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-6679728IPR009057Homeodomain-like
SuperFamilySSF466891.64E-9680731IPR009057Homeodomain-like
PfamPF002491.2E-7681725IPR001005SANT/Myb domain
CDDcd001673.94E-7681728No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
XNLTSLPLFG SGRASKYSSP PSATNCHHQL LLGFLDSWLS SHLNKLADTK NPSAGSKFIF  60
IRGVSFGAGL KIPGPSCXCD LEGFPFYCXT SEQVMAPIRS LPLITYSKEI VDGQPIYVSS  120
NSFPVKASNL EPAGHAFHSA ALRVAGFSEE EDIDNDKSDT PNEKEQSYTQ SSDSYSTKGK  180
KKSGSGEKIQ DHYALLGLGH LRYLATEDQI RKSYRETALR HHPDKQAALL LAEETEAAKQ  240
AKKDEIENHF KAIQEAYEVL IDPLRRRVYD STDEFDDEIP TDCAPQDFFK VFGPAFLRNG  300
RWSVTQPIPS LGDENTSLKD VDNFYNFWYS FKSWREFPHA DEFDLEQAES RDHRRWMERQ  360
NAKLSERARK DEYARIRSLV DNAYKRDPRI LGRKEAEKAE KQRKKEAKVL AKKLQEEEAA  420
RAAAEEKRRK EEEDRKAAEA ASQQKKAREK EKRLLRKERT RLRTLMVPVS SARLLDVTEE  480
DVEGLCMSLD MDQLRNLCDK IEGKEEYERA KILKDALGHS QNSKDEREDK RIPQQNGSVE  540
ANGKVPSSTS ERKDKPWSKE EIELLRKGMQ KYPKGTSRRW EVISEYIGTG RSVEEILKAT  600
KTVLLQKPDS AKAFDSFLEK RKAAPSIASP LSTREELEGV SNSNVPQANA TTKSETLQES  660
SSPSQAAPSA DVGSENGDQD TWSAVQERAL IQALKTFPKE TNQRWERVAA AVPGKTVNQC  720
KKKFTLLKES FRNKKTTAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1928739020123Zuotin
5dje_B1e-1928739020123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076507.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_027078876.10.0dnaJ homolog subfamily C member 2-like
RefseqXP_027178881.10.0dnaJ homolog subfamily C member 2-like
TrEMBLA0A068U0Y80.0A0A068U0Y8_COFCA; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225