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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_11535_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 293aa MW: 32645.9 Da PI: 4.7164 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 69 | 117 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g cra_locus_11535_iso_3_len_1275_ver_3 69 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDREARKIRG 117 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.9E-38 | 68 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.802 | 68 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 68 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-22 | 68 | 126 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.89E-31 | 69 | 126 | No hit | No description |
PRINTS | PR00367 | 8.3E-12 | 69 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 69 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MCGGAILSGL IPRSGNRGVS SSDLWPTAAA DFWPKTSADN APILKRSQPS ETGGEQVRKS 60 AKRQRKNLYR GIRQRPWGKW AAEIRDPRKG VRVWLGTFST AEEAARAYDR EARKIRGKKA 120 KVNFPNEEME FESTYHPPQQ FYPNFNANSS GVPYNTSNGC FYANLNQLEA AAGNGAYNYS 180 TVGFQTPSDE LSGSASDNEG IYSRLPVKEE EEEEEEQAAN PRENKPIEAT EREDEVEKLK 240 EELMAYENYM KFYQIPYLDG QSTTAAAASN PAQETAIGVG PIELWSFDEE SGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 69 | 125 | 6 | 63 | ATERF1 |
3gcc_A | 3e-21 | 69 | 125 | 6 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306244.1 | 2e-85 | ethylene-responsive transcription factor ERF071 | ||||
Refseq | XP_024167967.1 | 5e-85 | ethylene-responsive transcription factor ERF071 | ||||
Refseq | XP_027099028.1 | 6e-85 | ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | A0A059VQH5 | 0.0 | A0A059VQH5_CATRO; Ethylene-responsive transcription | ||||
STRING | XP_008454315.1 | 6e-85 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7118 | 23 | 29 |