PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_10399_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRF

Protein Properties

Length: 535aa MW: 58191.2 Da PI: 6.4101

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_10399_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.5e-24	177	220	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e cra_locus_10399_iso_2_len_1974_ver_3 177 DPEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKPVE 220 79***************************************997 PP
2	QLQ	55.5	1.7e-19	118	152	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa Q+ +L++Q+++yKy++a++PvPp+Ll++i+ cra_locus_10399_iso_2_len_1974_ver_3 118 PFTALQWKELERQAMIYKYMVASLPVPPDLLVPIS 152 8********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-11	117	153	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.7E-14	118	151	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.849	118	153	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.225	177	221	IPR014977	WRC domain
Pfam	PF08879	7.9E-20	178	220	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MEERKRLMDQ SRNTTNNSSD KVMGGHDDDD NDDDDRHRPL LSTNGGDDGG GGPTLNDSGA 60 NEVGRSTSPR RTRDISRDDV SAANAHGADN YSASAVTVTN LTTFRSPGGG MAAALGFPFT 120 ALQWKELERQ AMIYKYMVAS LPVPPDLLVP ISSRNFSDPT APLGNGSLYG LRYQNRDPEP 180 GRCKRTDGKK WRCSRDVAPH QKYCERHMHR GRPRSRKPVE VHPSVDTNNN NKKTRLNNQT 240 PPPLQTNPTG QEADRGFASS FLGTAGQIKD PLIHGDARAT APSISRSLYK EPNRALGWMM 300 SGEMVATNGV EEQWLHLMDT KRGLPPTERH SSIYGGTNSS ILHHGFAEEP PNLFSYTDLP 360 REEDIHSSRN NDDCHLFLNS DLISLKQPQM EDYRISRGFI DAWSNGNLET INNEPSISSS 420 QGKLSPSSLN LSIAMAADSA DHHKDCPPVS NWLPFSSGGP LAEVLQPSYM AGGSNPASPY 480 ASNADSISPP ATSVSSPSGV LQRALFSQSD GSVCNSPNIA LSTAPPELVA FQWLS

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MEERKRLMDQ SRNTTNNSSD KVMGGHDDDD NDDDDRHRPL LSTNGGDDGG GGPTLNDSGA  60
NEVGRSTSPR RTRDISRDDV SAANAHGADN YSASAVTVTN LTTFRSPGGG MAAALGFPFT  120
ALQWKELERQ AMIYKYMVAS LPVPPDLLVP ISSRNFSDPT APLGNGSLYG LRYQNRDPEP  180
GRCKRTDGKK WRCSRDVAPH QKYCERHMHR GRPRSRKPVE VHPSVDTNNN NKKTRLNNQT  240
PPPLQTNPTG QEADRGFASS FLGTAGQIKD PLIHGDARAT APSISRSLYK EPNRALGWMM  300
SGEMVATNGV EEQWLHLMDT KRGLPPTERH SSIYGGTNSS ILHHGFAEEP PNLFSYTDLP  360
REEDIHSSRN NDDCHLFLNS DLISLKQPQM EDYRISRGFI DAWSNGNLET INNEPSISSS  420
QGKLSPSSLN LSIAMAADSA DHHKDCPPVS NWLPFSSGGP LAEVLQPSYM AGGSNPASPY  480
ASNADSISPP ATSVSSPSGV LQRALFSQSD GSVCNSPNIA LSTAPPELVA FQWLS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027161232.1	1e-154	growth-regulating factor 8-like isoform X2
TrEMBL	A0A068U9X5	1e-126	A0A068U9X5_COFCA; Uncharacterized protein
STRING	XP_009597554.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7032	22	30