PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre17.g696300.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

C2H2

Protein Properties

Length: 1215aa MW: 124620 Da PI: 8.0886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre17.g696300.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	517	546	1	23
EEETTTT......EEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCg......ksFsrksnLkrHirt.H 23 ++C+ Cg + F + L++H+ H Cre17.g696300.t1.1 517 FTCHVCGrlglmyRYFADANALQVHMTEeH 546 89************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	7.9E-8	271	330	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	1.68E-7	277	334	No hit	No description
Pfam	PF13920	3.9E-7	280	329	No hit	No description
CDD	cd00162	2.83E-6	282	326	No hit	No description
PROSITE profile	PS50089	10.335	283	324	IPR001841	Zinc finger, RING-type
SMART	SM00355	32	430	457	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.28	493	516	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	495	516	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.4	517	546	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.307	547	580	IPR007087	Zinc finger, C2H2
SMART	SM00355	15	547	575	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	554	575	IPR007087	Zinc finger, C2H2
SuperFamily	SSF82708	5.3E-12	870	956	IPR001374	R3H domain
PROSITE profile	PS51061	12.063	871	936	IPR001374	R3H domain
Pfam	PF01424	1.5E-10	872	932	IPR001374	R3H domain
Gene3D	G3DSA:3.30.1370.50	4.9E-12	877	939	IPR001374	R3H domain
CDD	cd02325	8.04E-10	877	934	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1215 aa Download sequence Send to blast
MDASAPPFVP RQVRDSAPLY VASASPSDPS LSAAADTGRG SGRGIRGRGR ARGGVDGRGV 60 RSRGPHETAG SVPAAELGGA VHLNAQEPQQ EFPDLAVGRR GRGRGRGESR RSAFEPAFTA 120 RHPDHEQPAA SPHDSVNPAE PMAASAGAAG PSGRGSREQT RGRAGDGLPR RGRRGGEDRL 180 DVHCHGQPAA PAGPDVGTPE GPGGDNGAQR LVSARGGRRG NQVRVPRSEM VGGRGGGRAA 240 RRSATEMPGA AAGAEDGSAA ETVAVPGGAE ASDSDSDVEK LTCVICCEEV GWLAVGPCGH 300 THTCARCCLR LRLLYRDNKC PLCKQDNKEV VVTRPPLPPG ATFESLRAGE LQPQPPAAAS 360 ASAASSSGGT ASGGGGSGRG QSSLWQQPRW AKGVLVLDPL TAAAGGGPGA PAPRRRVRPL 420 HRSLLAMTST SCAVCDKHGK KPFGTMGLLL GHLRSAHGRS LCEVCLGAGL RFPLEYPPLE 480 PQALAAHMEA EHPRCEFCNL HFYTRDELYS HMTQRHFTCH VCGRLGLMYR YFADANALQV 540 HMTEEHHPCE HPDCFGCMIA FATQDELHTH IRERHSAHMP RWDQSRARPL LFDFIGQRGP 600 GAAAAAAPAE SSSGRGGSRA QRGGRGGDRD GRSEAARTRG GSGPSRPSIQ DPEAFPSLSG 660 LTLGAAAPSG LGDVRDTDGG LVVLDDDLGM ARERPGPGPA HRGAQPAQAG PASGGAPGMN 720 ALGPGTGPGA RLAGVWGGRV AGAGTFVEDF PELGLAAGSG GGGSGWGGST WSRPAAAPAA 780 PAATSSTPGA SLRKVTVKCP CGRRVDHLAL RADEEVPALR CNRDCEAAQR RSQLADAFGV 840 ASSDSHVSYF ERHRTPNYPA SLIQSAQSLG AEWVAGVERE LGRFLADPSG PRRTSLPAGM 900 SQAQRALVHE LAAHWGLATH SIGAGAMRAV QVLRAPSSGA PTRMLSAVAA AMPPDEVARM 960 LAALPGNTGT GAGWVLRLVD VEPGANMGYY LRRWEGEYVL TPGPGSGSSA PSTYLVTFAR 1020 EAAFHDCCST LGGGVRGVFR TQVERLAASG SNSASAPAST HEGAAQPRAG WTVLRSNRKT 1080 PSGAASGAGG SGSGGPSAGA VRSALAADAW GEDTSERRQP SAGTGSIGAA AGATAFAKPG 1140 GGSEPQLPGR GPKLDLAKET KWSALEAEEG EEEVEEAMAG GGESAAAESA HQAASSTRIG 1200 LAQTSDDLPT WDED*

Sequence ? help Back to Top

Protein Sequence Length: 1215 aa Download sequence Send to blast

MDASAPPFVP RQVRDSAPLY VASASPSDPS LSAAADTGRG SGRGIRGRGR ARGGVDGRGV  60
RSRGPHETAG SVPAAELGGA VHLNAQEPQQ EFPDLAVGRR GRGRGRGESR RSAFEPAFTA  120
RHPDHEQPAA SPHDSVNPAE PMAASAGAAG PSGRGSREQT RGRAGDGLPR RGRRGGEDRL  180
DVHCHGQPAA PAGPDVGTPE GPGGDNGAQR LVSARGGRRG NQVRVPRSEM VGGRGGGRAA  240
RRSATEMPGA AAGAEDGSAA ETVAVPGGAE ASDSDSDVEK LTCVICCEEV GWLAVGPCGH  300
THTCARCCLR LRLLYRDNKC PLCKQDNKEV VVTRPPLPPG ATFESLRAGE LQPQPPAAAS  360
ASAASSSGGT ASGGGGSGRG QSSLWQQPRW AKGVLVLDPL TAAAGGGPGA PAPRRRVRPL  420
HRSLLAMTST SCAVCDKHGK KPFGTMGLLL GHLRSAHGRS LCEVCLGAGL RFPLEYPPLE  480
PQALAAHMEA EHPRCEFCNL HFYTRDELYS HMTQRHFTCH VCGRLGLMYR YFADANALQV  540
HMTEEHHPCE HPDCFGCMIA FATQDELHTH IRERHSAHMP RWDQSRARPL LFDFIGQRGP  600
GAAAAAAPAE SSSGRGGSRA QRGGRGGDRD GRSEAARTRG GSGPSRPSIQ DPEAFPSLSG  660
LTLGAAAPSG LGDVRDTDGG LVVLDDDLGM ARERPGPGPA HRGAQPAQAG PASGGAPGMN  720
ALGPGTGPGA RLAGVWGGRV AGAGTFVEDF PELGLAAGSG GGGSGWGGST WSRPAAAPAA  780
PAATSSTPGA SLRKVTVKCP CGRRVDHLAL RADEEVPALR CNRDCEAAQR RSQLADAFGV  840
ASSDSHVSYF ERHRTPNYPA SLIQSAQSLG AEWVAGVERE LGRFLADPSG PRRTSLPAGM  900
SQAQRALVHE LAAHWGLATH SIGAGAMRAV QVLRAPSSGA PTRMLSAVAA AMPPDEVARM  960
LAALPGNTGT GAGWVLRLVD VEPGANMGYY LRRWEGEYVL TPGPGSGSSA PSTYLVTFAR  1020
EAAFHDCCST LGGGVRGVFR TQVERLAASG SNSASAPAST HEGAAQPRAG WTVLRSNRKT  1080
PSGAASGAGG SGSGGPSAGA VRSALAADAW GEDTSERRQP SAGTGSIGAA AGATAFAKPG  1140
GGSEPQLPGR GPKLDLAKET KWSALEAEEG EEEVEEAMAG GGESAAAESA HQAASSTRIG  1200
LAQTSDDLPT WDED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	52	RGIRGRGRARG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre17.g696300.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002949015.1	0.0	hypothetical protein VOLCADRAFT_120687
TrEMBL	A0A2K3CNN0	0.0	A0A2K3CNN0_CHLRE; Uncharacterized protein
STRING	XP_002949015.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4556	3	3

Link Out ? help Back to Top
Phytozome	Cre17.g696300.t1.1