PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre16.g677382.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 849aa    MW: 89157.7 Da    PI: 4.7462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre16.g677382.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-173783148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l d+v   G  +W+tIa+ ++ gR++k+c++rw ++l
  Cre16.g677382.t1.1 37 RGPWTPEEDKQLTDLVLSCGAQRWSTIAESIP-GRSGKSCRLRWWNHL 83
                        89******************************.***********8886 PP
2Myb_DNA-binding40.46.8e-1389133147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g+++  Ed  +v+ ++++G++ W+ Ia+ ++ gRt++ +k+rw++ 
  Cre16.g677382.t1.1  89 KGPFSDFEDAVIVRSHEKYGNK-WSVIAKLLP-GRTDNAVKNRWNST 133
                         7899999***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0353287IPR017930Myb domain
SuperFamilySSF466895.24E-2935130IPR009057Homeodomain-like
SMARTSM007175.0E-163685IPR001005SANT/Myb domain
PfamPF002498.3E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-243890IPR009057Homeodomain-like
CDDcd001671.59E-133983No hitNo description
PROSITE profilePS5129420.26388138IPR017930Myb domain
SMARTSM007172.5E-1388136IPR001005SANT/Myb domain
PfamPF002493.0E-1189133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2391137IPR009057Homeodomain-like
CDDcd001672.56E-991134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MTGRKSAEGG RSGRPRTHAK RSSSFREDDL DAQGEKRGPW TPEEDKQLTD LVLSCGAQRW  60
STIAESIPGR SGKSCRLRWW NHLSPQVKKG PFSDFEDAVI VRSHEKYGNK WSVIAKLLPG  120
RTDNAVKNRW NSTLKRKHTG NTLSNKFVDT YPELEPLMAD PEASREAVEY SAGLEEAKAI  180
MGAAAAEAAA GGHHMTMTGS EEEDHEHEEE DTMSEDEAEE GGSRKHAGSA SVADLGPGSA  240
AAAARRAAAV ALLPQRPLST RKHTQSRNWR ALEAADDATT SEDDDGAWEA EEAAEEQRIA  300
TIATSVGGAV VLCGTGSTSA SPIAQSPALA ALPAHLQSAS SSAAAAAAAN AHWLQQQQQQ  360
FGGSVDAADA APTPPAKRAR CAVSAANASP LQGLQPSLSQ LQPQQPMLTA SLHAACGYPA  420
PYAAAGTPAT AFTTTNAMCV GSGFAGEALA CRPAQLTQQP SLQQQQLQLP VGLEAYGSST  480
SNTFTGVRVS IPANMQQQPQ QQQPYQQVAV YPPQQCQVSQ SLQQMEAAML MQQQQLLQQQ  540
QQQQQQLQQQ QEQQQQQLVQ QQQQAAAMAD CGTELEGPND DLEWQFIMDT LDAAPAEQAT  600
FDDWTAGQQQ QAQAQQTQPQ QAQPMQVQQV LPVPVVAAQA APAVAGVNCY SSCSSGSAAA  660
TWVSGPQQLK STIVVSEAPV SLPPGDWATS AQKRQRTLMG LTQVTSCSGS GSGNASGCAV  720
GGGLLGTATS AAGLGSGASG LAGVGLGVSG LSLVQAAPVR TSSDFPWSAT AQDLDVCFFP  780
ATAGLYGSQS VLQQQQQQMQ QLPPMFAQPP TVAQSSATAY MPCGPSVVSF TDFSRMAGPF  840
NDPLAFLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-37371374104C-Myb DNA-Binding Domain
1msf_C4e-37371374104C-Myb DNA-Binding Domain
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Cre.100670.0normal conditions
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00596DAPTransfer from AT5G67300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre16.g677382.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CU120.0A0A2K3CU12_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-41myb domain protein r1