PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre14.g632176.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 1431aa    MW: 140833 Da    PI: 6.6742
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre14.g632176.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.2e-129621003145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                          +g +T eEd +l+++v+ +G + Wk+I  ++g  R ++qc++rw+
  Cre14.g632176.t1.1  962 KGHFTDEEDRRLLELVEAHGRK-WKLIGTELG--RLPEQCRDRWR 1003
                          689*****************99.********8..999*******8 PP
2Myb_DNA-binding23.31.5e-07110611402246
                          T...........-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   22 g...........tWktIartmgkgRtlkqcksrwqk 46  
                          g           +W++Ia++mg  R + qck++w++
  Cre14.g632176.t1.1 1106 GgggrrivldgiNWEAIASKMG-SRNPQQCKEKWYD 1140
                          156678888899**********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071759888958IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-139351004IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-139551004IPR009057Homeodomain-like
PROSITE profilePS5129418.1929571010IPR017930Myb domain
SMARTSM007176.9E-119611008IPR001005SANT/Myb domain
CDDcd001671.31E-89651003No hitNo description
PfamPF139215.8E-169651024No hitNo description
Gene3DG3DSA:1.10.10.609.4E-1510081031IPR009057Homeodomain-like
SMARTSM007173.3E-1010121144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-1511161147IPR009057Homeodomain-like
CDDcd001674.50E-511171139No hitNo description
PROSITE profilePS500906.48111181142IPR017877Myb-like domain
PfamPF139212.8E-511181157No hitNo description
SuperFamilySSF466891.76E-1011221206IPR009057Homeodomain-like
PROSITE profilePS500907.24811441197IPR017877Myb-like domain
SMARTSM007173211481199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1431 aa     Download sequence    Send to blast
MDVVSLVPDL QRAQHDHAAA AAAAAAAQQA ALWQQAGFSS DANAMLAAAA AAAAAAAMEQ  60
QQQHHHHHHH HHAMHPHPHQ HQHPHHQPPN HHHQHHHHHQ PMGLGPGAMA PGVPPSPPQP  120
PGAATAAAAA AGLGSAGLLG QAVMEAALGH AHAMEHAQAA IQQAQAAIEA QQAALGSMGS  180
LGGHMAGHGH GHGHGHGEGH GHGHGHMGDG MHHPHMMVDD GTGMGGVAEE VAAAQGQVGQ  240
LQQQLQLEEL AAAQAHLQQL MPLELTGTDL AGFMQHAMQQ AVEQQQAAAA AAAAAAAAAQ  300
QQAAAGGLPD EQLAAAAAAA AQQNAAHAAL LEQAMALAAL APLAAAGGMP MDHSGQSSYV  360
QMSDAAAAAA AAAAAAAVAA AGGGNPPGAQ GMPGQGAQPP MSHMGPSHMD LNSAAAAAAA  420
AAAGMQHGSM APPQPTGGVQ ALGLGPNGKP QRERKRQKQQ DFEYGDLKAF GDGTNSGGAG  480
GRSGGAGGDR RVRKRAEKKR KRAERELQEC AGVEEEEEDD DDGFLSLGGM HGGSDDGGSG  540
GAADAGSLAA AAAAKLARAQ AQQAAALAAA AASGSLAGGG GGGPATGHMA PQRPLQQHQP  600
GDGHISGMGA SCMDGGGGAG GGGNGGSASS DSQAAAAAAA AAAAAAAAEA LGTGVLTDTE  660
GFRNSAQSLM AALLAAAVPG GAAASAFHGL AAYVGGDMAP GGGGGGALDP QSLAAAAAAA  720
AAAPSISGLS MSSLFGGNGN SLMDAAAGAF GGMGVAGGDA AGAGAGMDGQ VGLAAADGSG  780
ASLTHQQHAE AAAAAVAAAA AAAAQAVQQQ AVAAAAAAAG QQGGSAAAQP AGMPQQQQQQ  840
QQQQQPAHAQ AQAAGAGAGE AASKPQRGGP KRMTQLSWNE DLQRTDVKSG PFSAAESEAA  900
KNAARNYAQS HGKSCTDWSW MFALQREGMH GMITMISDAV PHRTRKSLWA HLTRVLHSGN  960
YKGHFTDEED RRLLELVEAH GRKWKLIGTE LGRLPEQCRD RWRHIGISQQ RTTGPWSSEE  1020
QAKLQALVRE HLQAKQRAGG LVDDSLAMAA ALSGAGAGAD AGSAAAAAAA AAAAVAAFGM  1080
GAVGGGGNDA ERRGGKGGGG GGGGGGGGGR RIVLDGINWE AIASKMGSRN PQQCKEKWYD  1140
ALCPSMVSRG EWGPGDDRRM LRSLLASGVS REWEVNWEAL VEGRNAAACK RRWRLMLKTV  1200
ADHRNMEFTD ILQLLIDKYA PKLRHANNAA AAAAGALGLP AAAMAAAAQN AAAVVAAAVQ  1260
QAQAQAQAAA AVGQAPTPEQ LLAQQQAQEQ LQHMLTFQGA MGLMGAAAAA AAAGGGDPAA  1320
AAAAMAGGVD GLGMLPPAHG GHPQLAGLDP QQQQQAAAAA AAAAAAAALA GQAAGGGGAG  1380
VMGMPGMDHQ HHQHQHHQHH QHHHNQDVMA AAAAAAAAAA AGGGAYGDIE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493500KRAEKKRK
210931101GGKGGGGGG
310951109KGGGGGGGGGGGGGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre14.g632176.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3CYU10.0A0A2K3CYU1_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.13e-16MYB_related family protein