PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre13.g567250.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family C2H2
Protein Properties Length: 348aa    MW: 34289 Da    PI: 5.439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre13.g567250.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001780100121
                         EEETTTTEEESSHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                         ++C  C   F+++ +L++H +
  Cre13.g567250.t1.1  80 FRCDLCQANFPSQGQLQQHVS 100
                         89*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-868113No hitNo description
PROSITE profilePS501579.05880104IPR007087Zinc finger, C2H2
SMARTSM003550.007480104IPR015880Zinc finger, C2H2-like
PfamPF128743.5E-680104No hitNo description
PROSITE patternPS00028082104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDRKHTSLGA QAAQLQKSIQ NREQRRNAEK HQRHEALEAA GEYSAYDAPA SKRQAAGGPS  60
GAVARLSELT ALANRPAEVF RCDLCQANFP SQGQLQQHVS GPVHRKALER QAQEALAAQR  120
RAPYQHMMES ALGAAAWSAG HGGGGGGGGG GGGGGSRPVP GRGGPGGQQA GGGRGGGRDG  180
GRGGRGGRGG EEAPAGPRTD VVSHEAMVAA ATRNTDEPLT IDGWAPPTII APKPAPPTST  240
AAATGGAAAA PAGGSSKAGN GAVAATPCQA GKEGADKDAG DDSGGEDGPG LLGLAYGSGD  300
EEEEREGGAG GERVQVGKPG PGGGGSSSDE DEDEDGDGDK PFTGSFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre13.g567250.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002957805.12e-41hypothetical protein VOLCADRAFT_107821
TrEMBLA0A2K3CZE60.0A0A2K3CZE6_CHLRE; Uncharacterized protein
STRINGXP_002957805.16e-41(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1037722