PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre12.g522400.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 1377aa    MW: 139743 Da    PI: 8.3073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre12.g522400.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.6e-151151345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                        +WT+eEd ll+++ + +G++ W++++++++ gRt+ +c  rw+
  Cre12.g522400.t1.1 11 PWTEEEDSLLAKYQAIYGNK-WASVSQHIP-GRTGQSCAQRWR 51
                        7*******************.*********.***********8 PP
2Myb_DNA-binding54.33.1e-1760106148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +++WTt+Ed +l ++v+++G g W+t+ar+++ gRt+ qc  rw+ +l
  Cre12.g522400.t1.1  60 KDKWTTDEDSKLTQLVAEHGIGKWATVARHLP-GRTDQQCMGRWRRHL 106
                         689*****************************.************986 PP
3Myb_DNA-binding322.8e-10112153144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         +++W++eEd ll ++ ++lG+  W+ I++ +  +Rt+ qc+ rw
  Cre12.g522400.t1.1 112 KDAWSAEEDALLQRLYEELGTA-WSCISKQIA-NRTPQQCRGRW 153
                         679*******************.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.38154IPR017930Myb domain
SuperFamilySSF466891.0E-13559IPR009057Homeodomain-like
SMARTSM007172.7E-14856IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-191165IPR009057Homeodomain-like
PfamPF002494.2E-141151IPR001005SANT/Myb domain
CDDcd001672.34E-111151No hitNo description
PROSITE profilePS5129425.53655110IPR017930Myb domain
SuperFamilySSF466892.24E-2757153IPR009057Homeodomain-like
SMARTSM007171.3E-1559108IPR001005SANT/Myb domain
CDDcd001672.84E-1462106No hitNo description
PfamPF139211.8E-1663123No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2366114IPR009057Homeodomain-like
SMARTSM007179.9E-9111159IPR001005SANT/Myb domain
PROSITE profilePS5129413.5111161IPR017930Myb domain
CDDcd001671.05E-7114153No hitNo description
Gene3DG3DSA:1.10.10.605.7E-15115154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1377 aa     Download sequence    Send to blast
MPSSAFKNGA PWTEEEDSLL AKYQAIYGNK WASVSQHIPG RTGQSCAQRW RHKVNPNIVK  60
DKWTTDEDSK LTQLVAEHGI GKWATVARHL PGRTDQQCMG RWRRHLDPNI RKDAWSAEED  120
ALLQRLYEEL GTAWSCISKQ IANRTPQQCR GRWCILSGLG KNKMPSPAAP QTPHPERGRL  180
RKSTGAIAVA AFPSARHEQA PPLQQPPAGQ ACPSTITRRG AVTELPALPA SACGPRLCEA  240
PTVQQARRTR AAARISTAAG MEPLSAGGGE EQGGAAAGAL APRTQPRLAR HRTRLGGVRE  300
AEGGAAPVTS EEQESHGRQP GPEGEDEEPA PSATEDESEG QEVQDASDCQ EDDVNGNTRT  360
RRGRLVLGRR LVSFRTGPRN TVRRPSSRLT ATATMITSPG ARAASAAARP AANRVSAAAA  420
AVALLSPPRG ALALALCDDE DEEAMLRGLL DDEDDLPPPP LPGPPSAATN AQSPQGEAGS  480
DQRLHTPAAD DQPVRALRPA TGAAAGASAA AAAAGAADDQ GVERLRSGSE AGVPTGSAGA  540
PCRGSHRRAA SQPETRVDSK MACGISLWAA EAEAEGLPDV PTRKTRSGRV YHLSSSSTCT  600
NTSACGSQRR RNRPSPTGPP DTAATSTKDE AAPSSTPVAE MAVLALEVTV AAAGAGPSNA  660
AVSGGPSTTA IRAPRQDAAH LSGGQAVASP RPMLSEDEGD AAEAPPQPGV PDAEQQAPAP  720
VPAPLPPLEA AGVAQELLQN LNSPPPLQVV GRLLTGGSTR SSFGLPEVLL GANGVGGAAV  780
AGHAASPGDD LPAADWNVVG SPPTSSLLAL LQAGLLQTPT GTPGASPGPS ILRAPVQQDM  840
PQVTPGISNQ WSDVQAVSWS EWRNIHAGFG VLSRVPGLAC GSAAGTPDNT RTLARTASAA  900
ESARGVGFTP RRDMFVRPPG CQGAAAAGCS PRPPPLHIGA AGSVECDADN EGHGGTRSLL  960
TSPSGSVSRV RRSAHRRASA DEAILRLAAA GHDLGAAATA GAVAGPSSRP GSARGHPGMS  1020
PSAGLRMSPA VARTTCELAQ EAALPDFCSP SKRQRMATSE PGHVAGPQLG QQQRQQQQLG  1080
GLAGPSSGAA LALGGLSAAG GFGARLPLAP RFGTSMLGSV FGAAGKQAGL LDNLTNGNRC  1140
GQDGVAAPMS LLARLQAVEQ AMSGAATGTA GAATASAIHA PASSNLPPGL LRALEGTSPH  1200
PTIAPPPTMP LPVLRPLPPV PFVPIPPGLA RALMPPPSSR ARPASGGHAP VCTHAPLSQP  1260
GASENASMPA TCAAGVSPTY STPVMATGHE ASGLTGPHGG SAGVSGVGLG ALPSFAGSLP  1320
KPPVGLPPLV LPKLPGADGA GGRQHGMASF FPVLSMASHQ QLNADKENVA AHQPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-34101536151MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-34101536151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre12.g522400.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001697041.10.0predicted protein
TrEMBLA0A2K3D4560.0A0A2K3D456_CHLRE; Uncharacterized protein
STRINGEDP007330.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-33myb domain protein 3r-5