PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre09.g399067.t2.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 899aa    MW: 85411.9 Da    PI: 7.5251
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre09.g399067.t2.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-162671147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+WT+eEd ll ++++ +G+++W+ +a+ +  gR++k+c++rw++ 
  Cre09.g399067.t2.1 26 KGAWTPEEDALLTKLIATYGTKNWSVVAAGIK-GRSGKSCRLRWHNQ 71
                        79*****************************9.************96 PP
2Myb_DNA-binding44.92.7e-1478120145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +++++Ed  ++ a++ +G++ W++Ia+ +  gRt++++k++w+
  Cre09.g399067.t2.1  78 KEPFSEWEDAVIILAHEVHGNK-WAAIAKLLS-GRTDNSVKNHWN 120
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.4892176IPR017930Myb domain
SuperFamilySSF466892.58E-2823119IPR009057Homeodomain-like
SMARTSM007171.5E-162574IPR001005SANT/Myb domain
PfamPF002491.7E-162671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-242779IPR009057Homeodomain-like
CDDcd001671.32E-132870No hitNo description
SMARTSM007177.8E-1477125IPR001005SANT/Myb domain
PROSITE profilePS5129418.91777127IPR017930Myb domain
PfamPF002491.3E-1278120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2180127IPR009057Homeodomain-like
CDDcd001671.37E-980123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MPADPDRDMD VDMDGEQWGG GDDIKKGAWT PEEDALLTKL IATYGTKNWS VVAAGIKGRS  60
GKSCRLRWHN QLNPDVKKEP FSEWEDAVII LAHEVHGNKW AAIAKLLSGR TDNSVKNHWN  120
ATLKRKVNTN TLRNRFLKER VVLQWLLDHP ELDTSRTKDA QTKAEISING NWAGKATRRA  180
QATITAGGSG RGRSRRNRSR SAESGSATDD GDDDAYVDDG DGDDGGPGGG SGPGGEQHGA  240
SISTGVRGVS VGAGAGDRDR GDRGDRGDRG NGGGGAGTGP IDPTAALQQL NSNLALNVNA  300
LGGGGGGPLG PLGPVDLGLG PGGFGLGPGG PLGMGGSLGP AGGLGLGPGG LGGLGLGAGP  360
GAGPGRPLGR TNSAAAALAA AAAAAGVLPP PLGASGGSRQ LLDLLPGGGA GGPVGGGPLG  420
GGGAGGRGGG GRDLDYGNDH RGRNDSYDGS GHMDLGPGGG GGGGPFGGPR NGGMTQPQPP  480
GRAGGPGGMG PGGGGGGPSR LPPGPDVGGG SGLGMPGGVS DIELFRSLPE ATRLCLIELA  540
RLAGPATLSI IERERQELAA GVLAGGLGGM GGGGGGHGSW QQQGIVGRGG VAAMDDFGGG  600
RSREQSLSDG LDMAGPRGGM GGGPMGGMGP GMHHGGGGGG HRGSGGVTGP HGGSGNANGY  660
NGNGGGYGSN GSMHMAGGGS GGPKGGPYND PYGDMGRGGR GGGSGGDGYG GGAGGGGMRG  720
MGGGGGGPVS RRNSGSGYGG MGFNGSGNDP MIMGGPLGGG GADAAAVLRQ LAQRGGGGPG  780
GGMVGPMGGG GGGMGSVPGG GLDGYGGGGG GRGMLVGGGG GGGLGPGGLG SLGGGGGLGG  840
VPVSSAELRM LQGFMGGGGR SGLAGVLQKQ LAAADPGLYR GLSEELAHLL TSVDPGSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40231294110B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424430GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre09.g399067.t2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DET20.0A0A2K3DET2_CHLRE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-42myb domain protein 109