PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre09.g399067.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 900aa    MW: 85540 Da    PI: 7.5251
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre09.g399067.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-162671147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+WT+eEd ll ++++ +G+++W+ +a+ +  gR++k+c++rw++ 
  Cre09.g399067.t1.1 26 KGAWTPEEDALLTKLIATYGTKNWSVVAAGIK-GRSGKSCRLRWHNQ 71
                        79*****************************9.************96 PP
2Myb_DNA-binding44.92.7e-1478120145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +++++Ed  ++ a++ +G++ W++Ia+ +  gRt++++k++w+
  Cre09.g399067.t1.1  78 KEPFSEWEDAVIILAHEVHGNK-WAAIAKLLS-GRTDNSVKNHWN 120
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.4892176IPR017930Myb domain
SuperFamilySSF466892.58E-2823119IPR009057Homeodomain-like
SMARTSM007171.5E-162574IPR001005SANT/Myb domain
PfamPF002491.7E-162671IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-242779IPR009057Homeodomain-like
CDDcd001671.32E-132870No hitNo description
SMARTSM007177.8E-1477125IPR001005SANT/Myb domain
PROSITE profilePS5129418.91777127IPR017930Myb domain
PfamPF002491.3E-1278120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2180127IPR009057Homeodomain-like
CDDcd001671.37E-980123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MPADPDRDMD VDMDGEQWGG GDDIKKGAWT PEEDALLTKL IATYGTKNWS VVAAGIKGRS  60
GKSCRLRWHN QLNPDVKKEP FSEWEDAVII LAHEVHGNKW AAIAKLLSGR TDNSVKNHWN  120
ATLKRKVNTN TLRNRFLKER VVLQWLLDHP ELDTSRTKDA QQTKAEISIN GNWAGKATRR  180
AQATITAGGS GRGRSRRNRS RSAESGSATD DGDDDAYVDD GDGDDGGPGG GSGPGGEQHG  240
ASISTGVRGV SVGAGAGDRD RGDRGDRGDR GNGGGGAGTG PIDPTAALQQ LNSNLALNVN  300
ALGGGGGGPL GPLGPVDLGL GPGGFGLGPG GPLGMGGSLG PAGGLGLGPG GLGGLGLGAG  360
PGAGPGRPLG RTNSAAAALA AAAAAAGVLP PPLGASGGSR QLLDLLPGGG AGGPVGGGPL  420
GGGGAGGRGG GGRDLDYGND HRGRNDSYDG SGHMDLGPGG GGGGGPFGGP RNGGMTQPQP  480
PGRAGGPGGM GPGGGGGGPS RLPPGPDVGG GSGLGMPGGV SDIELFRSLP EATRLCLIEL  540
ARLAGPATLS IIERERQELA AGVLAGGLGG MGGGGGGHGS WQQQGIVGRG GVAAMDDFGG  600
GRSREQSLSD GLDMAGPRGG MGGGPMGGMG PGMHHGGGGG GHRGSGGVTG PHGGSGNANG  660
YNGNGGGYGS NGSMHMAGGG SGGPKGGPYN DPYGDMGRGG RGGGSGGDGY GGGAGGGGMR  720
GMGGGGGGPV SRRNSGSGYG GMGFNGSGND PMIMGGPLGG GGADAAAVLR QLAQRGGGGP  780
GGGMVGPMGG GGGGMGSVPG GGLDGYGGGG GGRGMLVGGG GGGGLGPGGL GSLGGGGGLG  840
GVPVSSAELR MLQGFMGGGG RSGLAGVLQK QLAAADPGLY RGLSEELAHL LTSVDPGSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40231294110B-MYB
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425431GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre09.g399067.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DEV60.0A0A2K3DEV6_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-42myb domain protein 109