PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre07.g345350.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 812aa    MW: 77867.5 Da    PI: 5.4533
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre07.g345350.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.2e-094302047
                        TTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqky 47
                        G+++W++Ia++++ gR++k+c++rw++ 
  Cre07.g345350.t1.1  4 GPRNWTSIASCIP-GRSGKSCRLRWLNQ 30
                        889**********.***********996 PP
2Myb_DNA-binding50.83.8e-163879245
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                        g++++eEd  ++ a+ q+G++ W++Ia++++ gRt++++k+rw+
  Cre07.g345350.t1.1 38 GPFSAEEDAVILWAHMQYGNK-WASIAKHLP-GRTDNHIKNRWN 79
                        89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.597131IPR017930Myb domain
SMARTSM0071713133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-16238IPR009057Homeodomain-like
CDDcd001671.54E-6429No hitNo description
PfamPF002494.2E-8430IPR001005SANT/Myb domain
SuperFamilySSF466891.13E-261188IPR009057Homeodomain-like
PROSITE profilePS5129423.4943286IPR017930Myb domain
SMARTSM007171.7E-133684IPR001005SANT/Myb domain
PfamPF002491.2E-133879IPR001005SANT/Myb domain
CDDcd001675.47E-103982No hitNo description
Gene3DG3DSA:1.10.10.606.4E-233985IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MTQGPRNWTS IASCIPGRSG KSCRLRWLNQ LSPAVKSGPF SAEEDAVILW AHMQYGNKWA  60
SIAKHLPGRT DNHIKNRWNC TLKKKHSDIM AQLRQECGPD GIVSIAAIHN VLVSQGGNGG  120
AGRGAPPMLR GPGPVLGGGG GPKGPPGMGF LPGLGGLGGL GRDLAMGGPP GSEFLMPPGL  180
PGLPGGLPPG LGGGLPPGLA PGLPGGLPPG LHPNAAMMLA AGGPLAAAAA AGGLGGLGGP  240
MGPGGPMGMA GAGAAAAAAA LADQEWRLRL GGAAGGAGSA FSLYGNAAGG LGAGAGGVGG  300
GGSSKSEDGR SLKRRRDGET PDPGSDEDSA AVALKQLAHA EPRGHEGQLR ADLRDLQRLN  360
LQRGGGGGGQ SGSGAGEDED DDMMDGDGDE EEEEEEGGGG GGGGEHGRSG RGEEEGEEGG  420
DGGAGRARKE GGGAAAAAAA AAAAMATLAG AAAGAGGLPG NAASAGAAAT GGARGAGAGP  480
AAGAKPAAGS GDVSGSGAGE DDEAEAGAGG AAKEEERDER RRRDSGPRAR AAGGEGGDGG  540
SGDAADDAGE AQARGGAAGI AAAGRTGSGT GPAASGKPQQ PQQPQQQPKQ DQRAGGGGGS  600
GGATAKKESS RDGTGAAAGS SHKPTPGDRS ERGGDRGNDR DRERGERDPR DRDPRDRGGD  660
RNGPMGDAMI AQNTAAAAAA AAAAAAANLP LPNTPAASYG ALLNQLPETL MQLSSTLRVV  720
LTAGNMGAAQ ALVTKLEELA YSVLMQRAAF NLANAHDGGH GGGGGPGGSQ LPAALQAAAG  780
GLGLGPGPAG PPGNVDPNLI AQLLLLTQSG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2448523104MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-2448523104C-Myb DNA-Binding Domain
1msf_C9e-2448523104C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1518523ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre07.g345350.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DKV20.0A0A2K3DKV2_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-33myb domain protein r1