PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre03.g174500.t1.1

Common Name

HDZ1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

HB-other

Protein Properties

Length: 1817aa MW: 188906 Da PI: 4.8622

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre03.g174500.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.4	1.8e-16	16	70	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++R + t+ q e+Le+ ++ n++ps ++r+ L +++gLte+ V+ WF NrR k+k Cre03.g174500.t1.1 16 KPRANKTPLQKEVLEASYQLNQHPSIDHRKALGDRIGLTEQEVQAWFTNRRRKDK 70 89***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-17	7	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.07E-14	10	70	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.37	12	72	IPR001356	Homeobox domain
SMART	SM00389	7.4E-16	14	76	IPR001356	Homeobox domain
CDD	cd00086	5.52E-15	16	70	No hit	No description
Pfam	PF00046	7.6E-14	16	70	IPR001356	Homeobox domain
PROSITE profile	PS50827	11.605	652	712	IPR018501	DDT domain
SMART	SM00571	0.008	652	712	IPR018501	DDT domain
Pfam	PF02791	1.5E-6	658	707	IPR018501	DDT domain
Pfam	PF05066	2.1E-14	826	892	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	9.7E-7	1074	1114	IPR028942	WHIM1 domain
Pfam	PF15613	7.0E-14	1261	1333	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1817 aa Download sequence Send to blast
MEGDAGAPDL KPKATKPRAN KTPLQKEVLE ASYQLNQHPS IDHRKALGDR IGLTEQEVQA 60 WFTNRRRKDK LAEAKKATAT PPPAGTPSAD ASAGASPGGP VAGAPAGTIP HAAAGAAPSP 120 GAVAAASPKP KVPRAPKAPK LSPAGASPVV PGQSPPGAAA MGVAGPIPRA PGQLPPGVAP 180 AAAPMGGPAG LARHVPAAAP PSAAAAAAPA AAAAEEEETD DGEDEAGPAA AAWENIRQLC 240 VAARATLPVP YREDGPELGF LFDEPPMPGE SAGGGGKRRR VAGPEGDAGA GGSLGGPEGV 300 GSVLLRRPGG NKPIVGQEAG PVGVMTVAEL EMRRQQLLMQ QQQQQAVLDA ARAQAEANGG 360 GAPTGATAKA INAMQKEQER LRKELLKQQE RMERERKREA DERHRELERH QKEQRKLNDK 420 MEKERAKEEA RKLKEMEKMK IAEERELKRL EAAREKERKA EERRKAVEER KKEKDTRRAL 480 IQQERLVLRQ RHREGAAVPP DDEELEYRAL LEAAGIDPAT IALDPEEDAA QAAAQAAADQ 540 ALADAGVPVP AATPPPRKRP RPDLPRPPFP PPSLELHPAW PAPERQPPAA STAAAGAAAA 600 AENGGDAEMA DAEAQPQPPE ATPAPEGAQP QLQSDAQPEA EAEEELSDSL DPDLGTELLV 660 CWSFLQSFAD LFGVAVPSLE QLLGGLAAGE DSRLLGDVHC ALLRLLQADM EDAHDEKERV 720 GRPTANVPHF MDKSVAGSAQ RLEEAWAWGF DVDAWRAHLN TRTWPEVLRQ VAIVWGRGRA 780 RPAVRRPAQD LGKGPRIQGM DGEDVLDDGA TGGSLKLRMP QRYTHGTVKA AAWQVLANVG 840 PNGLSVGDLV RRIQKQGLRE MRSSKTPEAV VAGSLARDVL FTKVAPATWA LTAVVDYHKR 900 KNEARERREA AGKKKGKAGE GEGAGAGKAS DGGAAPGGDG GDAEMADATA GAEEGQVKEE 960 AGVKKEGGAG RKVKKEPGAA AAPGVKEEPK EDATGAASPA PMDTDAPGDG VKQEPKDGGE 1020 AGPSSGGAEV KTEEGKDGAG NEEEEYSGEE EEQQQEEEEQ QAEEETASRG ARDAWVAALL 1080 EGGYGSLRLR QRIEALSFLC HAVLDGPTVR AKLELRTEEA MARKKAVFEE AKNDKRKRQE 1140 EAALRAAAAA EEARKKAEAA AAAAAAGGGA APGGDGATPV PGSRGATPAP GAPVDPKAIA 1200 AELFGAGAAG AGAGAAAAVV PTDPAKAAEE AKRRAEEEEE DKIKRQQRAE EVRRIDEECA 1260 IRAEPLGSDR RHNRYWLFTS GSPDDAGTAR LWVELAPEGR WRLLTSPEAF DQLVAALEPR 1320 GLREGALAQA LARVADTVKA AMPGIAPVAD PTPYDALPDS ARAALEATAV QRGAVARLAA 1380 AAVLAADDDD YTEGLDFLEA DSGPVSALKR DLLRLEAAVP ADAMAESFHS LSWKERVMNA 1440 PGLPELRACL GQLEAALLAS PDGTTPGLLA TVFHRNPPLV RGAWVEVGRE VATALPGHAS 1500 KEILPPVERP DGGPPPEPND EPLAWLPATL PALALRLLAL DAHIVYREGA PAGRECLAGY 1560 RYTIRPAPLD AQPLALPAGE DDELVPAASA ALPLAAGGGA VVLTNVLADR GRVREANRRV 1620 PELPAEVMAM RARDFSLPVD DIREQVEEAE REGLFNVVPT GTGTSGSAAA VAALAASVGG 1680 SKKKGKPLPV ALPPGATTKR SSGSKSVVIV RQPTPGVGAA APGGKSKKGA TAAGGGGRKG 1740 AAAAGAAAPK ADKKGGTKSK KAAAAATPPP AAEEDADDDA GVPAEGLDEP LYLEDDWEDE 1800 GNEEGLDDPD DSDYGF*

Sequence ? help Back to Top

Protein Sequence Length: 1817 aa Download sequence Send to blast

MEGDAGAPDL KPKATKPRAN KTPLQKEVLE ASYQLNQHPS IDHRKALGDR IGLTEQEVQA  60
WFTNRRRKDK LAEAKKATAT PPPAGTPSAD ASAGASPGGP VAGAPAGTIP HAAAGAAPSP  120
GAVAAASPKP KVPRAPKAPK LSPAGASPVV PGQSPPGAAA MGVAGPIPRA PGQLPPGVAP  180
AAAPMGGPAG LARHVPAAAP PSAAAAAAPA AAAAEEEETD DGEDEAGPAA AAWENIRQLC  240
VAARATLPVP YREDGPELGF LFDEPPMPGE SAGGGGKRRR VAGPEGDAGA GGSLGGPEGV  300
GSVLLRRPGG NKPIVGQEAG PVGVMTVAEL EMRRQQLLMQ QQQQQAVLDA ARAQAEANGG  360
GAPTGATAKA INAMQKEQER LRKELLKQQE RMERERKREA DERHRELERH QKEQRKLNDK  420
MEKERAKEEA RKLKEMEKMK IAEERELKRL EAAREKERKA EERRKAVEER KKEKDTRRAL  480
IQQERLVLRQ RHREGAAVPP DDEELEYRAL LEAAGIDPAT IALDPEEDAA QAAAQAAADQ  540
ALADAGVPVP AATPPPRKRP RPDLPRPPFP PPSLELHPAW PAPERQPPAA STAAAGAAAA  600
AENGGDAEMA DAEAQPQPPE ATPAPEGAQP QLQSDAQPEA EAEEELSDSL DPDLGTELLV  660
CWSFLQSFAD LFGVAVPSLE QLLGGLAAGE DSRLLGDVHC ALLRLLQADM EDAHDEKERV  720
GRPTANVPHF MDKSVAGSAQ RLEEAWAWGF DVDAWRAHLN TRTWPEVLRQ VAIVWGRGRA  780
RPAVRRPAQD LGKGPRIQGM DGEDVLDDGA TGGSLKLRMP QRYTHGTVKA AAWQVLANVG  840
PNGLSVGDLV RRIQKQGLRE MRSSKTPEAV VAGSLARDVL FTKVAPATWA LTAVVDYHKR  900
KNEARERREA AGKKKGKAGE GEGAGAGKAS DGGAAPGGDG GDAEMADATA GAEEGQVKEE  960
AGVKKEGGAG RKVKKEPGAA AAPGVKEEPK EDATGAASPA PMDTDAPGDG VKQEPKDGGE  1020
AGPSSGGAEV KTEEGKDGAG NEEEEYSGEE EEQQQEEEEQ QAEEETASRG ARDAWVAALL  1080
EGGYGSLRLR QRIEALSFLC HAVLDGPTVR AKLELRTEEA MARKKAVFEE AKNDKRKRQE  1140
EAALRAAAAA EEARKKAEAA AAAAAAGGGA APGGDGATPV PGSRGATPAP GAPVDPKAIA  1200
AELFGAGAAG AGAGAAAAVV PTDPAKAAEE AKRRAEEEEE DKIKRQQRAE EVRRIDEECA  1260
IRAEPLGSDR RHNRYWLFTS GSPDDAGTAR LWVELAPEGR WRLLTSPEAF DQLVAALEPR  1320
GLREGALAQA LARVADTVKA AMPGIAPVAD PTPYDALPDS ARAALEATAV QRGAVARLAA  1380
AAVLAADDDD YTEGLDFLEA DSGPVSALKR DLLRLEAAVP ADAMAESFHS LSWKERVMNA  1440
PGLPELRACL GQLEAALLAS PDGTTPGLLA TVFHRNPPLV RGAWVEVGRE VATALPGHAS  1500
KEILPPVERP DGGPPPEPND EPLAWLPATL PALALRLLAL DAHIVYREGA PAGRECLAGY  1560
RYTIRPAPLD AQPLALPAGE DDELVPAASA ALPLAAGGGA VVLTNVLADR GRVREANRRV  1620
PELPAEVMAM RARDFSLPVD DIREQVEEAE REGLFNVVPT GTGTSGSAAA VAALAASVGG  1680
SKKKGKPLPV ALPPGATTKR SSGSKSVVIV RQPTPGVGAA APGGKSKKGA TAAGGGGRKG  1740
AAAAGAAAPK ADKKGGTKSK KAAAAATPPP AAEEDADDDA GVPAEGLDEP LYLEDDWEDE  1800
GNEEGLDDPD DSDYGF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	69	RRRKDK
2	276	280	KRRRV
3	557	561	KRPRP
4	1122	1137	RKKAVFEEAKNDKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre03.g174500.t1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU271676	0.0	EU271676.1 Chlamydomonas reinhardtii zygote-expressed homeodomain protein (HDZ1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002958970.1	0.0	homeodomain protein
TrEMBL	A0A2K3DXB3	0.0	A0A2K3DXB3_CHLRE; Uncharacterized protein
STRING	XP_002958970.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5105	8	8
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	9e-33	homeobox-1

Link Out ? help Back to Top
Phytozome	Cre03.g174500.t1.1

Publications ? help Back to Top
Lee JH,Lin H,Joo S,Goodenough U Early sexual origins of homeoprotein heterodimerization and evolution of the plant KNOX/BELL family. Cell, 2008. 133(5): p. 829-40 [PMID:18510927]