PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre01.g034350.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family MYB
Protein Properties Length: 1341aa    MW: 132305 Da    PI: 7.1387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre01.g034350.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141974148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                        +g W++eEd ll ++vk++G g+W+ Iar ++        +gR +kqc++rw+ +l
  Cre01.g034350.t1.1 19 KGGWSPEEDALLTRLVKKFGEGNWSPIARALNeatgkteaTGRIGKQCRERWNHHL 74
                        688*************************************************9886 PP
2Myb_DNA-binding56.75.7e-1880122145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++WT+eE+ l vda+k+lG++ W+ Iar+++ gR+++ +k++w+
  Cre01.g034350.t1.1  80 KDPWTPEEEVLVVDAHKRLGNR-WSDIARCIP-GRSENAVKNHWN 122
                         689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8021374IPR017930Myb domain
SuperFamilySSF466893.12E-2817121IPR009057Homeodomain-like
SMARTSM007175.7E-141876IPR001005SANT/Myb domain
PfamPF002498.2E-131973IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-212181IPR009057Homeodomain-like
CDDcd001671.34E-112274No hitNo description
PROSITE profilePS5129423.77675129IPR017930Myb domain
SMARTSM007177.0E-1679127IPR001005SANT/Myb domain
PfamPF002495.5E-1580122IPR001005SANT/Myb domain
CDDcd001677.70E-1282125No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1982128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1341 aa     Download sequence    Send to blast
MSRRSAAGGP PRHPTAKLKG GWSPEEDALL TRLVKKFGEG NWSPIARALN EATGKTEATG  60
RIGKQCRERW NHHLSPGLRK DPWTPEEEVL VVDAHKRLGN RWSDIARCIP GRSENAVKNH  120
WNATLRKRVT PENPAGPLKE YLDSLNLTVA PRKRGGGGGG GGGGGGGAKR KRNNRGSQEE  180
DTSEDPDEDL LPDDLDDSLD DSTTSRTAHT AAAAAASGGG RGRTASRATT TGGGGGSRAA  240
HAAAAARTTS APTAAAAVTA ATVAANSPDS SSAGGAVGPA AADAAHSAGG GAVVCGGAYS  300
SGGVVTFAGA GLLCSAAVPT TTVTTAAVPL ASDAGVGVDD GADDLAPGVR RSSRRAAQLS  360
SQRLRDMVEA ERRLMDELAE DEEAQEQQQM QAAEAAEAAA GAAAEAAEAA EMQAEMQVKR  420
AEAGEPAGAS VGSGRGHGGG GGGGGGGGAR AEYGAEAEVS SGGAAKRRRR DGGGAAAAAA  480
AQRAGAPQRR PPARSESVCD SAGIRMAPLQ KPPQPALPSQ HQQQALHHQL QHQHQQPAMS  540
PFGYAASQAE PTAAAAAAAA AGCMVMPRVA SSAALAPGAD ASGGGGDRAA LAPPGSMLAH  600
AATAASGFPA AAAATAATAG SPYHPHHPHQ QQQHPGGGGG GWTSMLPYNW STNNMQHMAA  660
VAAAPGGPAG EEDEFQAYRR SSSGGGGCYS GGGGGKVRPK GSPQHESAAP AMRHVSSSHR  720
LHGPAASAQL SLSLDPMPAA TTVTTATGAG AAAAAAAAAA TAPGAAGARA AAAAVAAAGP  780
ADDDDETCLF LSPAATEMTT AGGGGGLRHV ASGSALFSYD TSAPPAPPLA PPPAPAQEAR  840
QQPTMPAEQQ QELQRQPSAI ACPRPSLAQP QQQQPYANSL WQQQPQQPQQ PQQLQPQHHM  900
QHQHMQHMHL QQYQQRQQPQ QQRPQQQHQQ PHQHQQHQQQ HQAGGRQQHA LAHLLHLAPT  960
PLPLRAWTPP NLFDTAHLHL DFGCPDSPLL DALGGSGGGT AAAAGAGSGG AAATACTAGA  1020
AAAAAAAEAA AAAVPAPGAG VGAGGDGSSS TSSAPSGEAG GSGSGSGGAE PGTARSVQAG  1080
AAAEAAADRS DAAVMQMMKR ESSFGFLANA AGAAAAATGS LTVGSAAPAA AAGTAAAAPS  1140
AAWPGALQAC NAAATAAAAA AASATASAAS SQAMPSAPSS PGVWPPAATA APALPYLPPL  1200
APLGGPPALP SPPCSPLIWN GLGMAAPLPP QMHHALLGST SAPPPQHQQQ QQQQQHHQQA  1260
ATAASADAAA STAGAGAGAG AAPAAPYMLP AGYYYHPGPV PTWHHPVSSF HGPLYGPVTY  1320
PPMPAAAAAV PAAAAAAVPQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-38181293105C-Myb DNA-Binding Domain
1msf_C1e-38181293105C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151171RKRGGGGGGGGGGGGGAKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre01.g034350.t1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3E7150.0A0A2K3E715_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.12e-35myb domain protein 118