PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_5.104
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 477aa    MW: 54301.9 Da    PI: 6.5484
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_5.104genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.11.4e-24105201186
                     trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 
                                  +Wt+++v++Li a+ +++++ ++++          +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ 
  evm.model.supercontig_5.104 105 KWTDSMVRLLIMAVYYIGDEAGSEAndkkkdgallQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGt 186
                                  7**************99888886544667888999**********************************************5 PP

                     trihelix  72 tsessstcpyfdqle 86 
                                  +++++++ ++++ ++
  evm.model.supercontig_5.104 187 ACRVVENQSLLETMD 201
                                  59*******999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-22103226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEPNGLPGGI FSGIGAGMLG LEMPLHPQQN PQNPHHLQQH QQMVSYAPHD ADHPQQTQQS  60
IKQGYPYGQK PKQASLLSDE DDHGFNPDDS TGDGKRKISP WQRMKWTDSM VRLLIMAVYY  120
IGDEAGSEAN DKKKDGALLQ KKGKWKSVSR AMMEKGFYVS PQQCEDKFND LNKRYKRVND  180
ILGKGTACRV VENQSLLETM DLSPKMKEEV RKLLNSKHLF FREMCAYHNS CGHGAATTVV  240
GGPSGANGSS SVQNDASQVQ HQQSQQQRQR CLHSSENAHS SRSEADGSKM GRTGSEEDDD  300
EEDDTEDDDD EEDDEEEGNS RGQNGHRHED HDNEDNKFSS KRQRIIGPLS SPQSPLMQQL  360
SSEVTSVIQD GTRNGWEKKQ WLKMRLLQLE EQQVSYQCQA FELEKQRLKW VKFSSKKERE  420
MERAKLENER RRLESDRMVL LVRQKELELL HVQHHHHHHQ QQNSSNKRSD PSSVTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_5.104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908803.10.0KNR4/SMI1 homolog isoform X1
RefseqXP_021908804.10.0KNR4/SMI1 homolog isoform X1
TrEMBLA0A2C9VCP20.0A0A2C9VCP2_MANES; Uncharacterized protein
STRINGevm.model.supercontig_5.1040.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Representative plantOGRP9974610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-83sequence-specific DNA binding transcription factors