PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_244.7
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 335aa    MW: 37332 Da    PI: 9.0044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_244.7genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.3e-55121391128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gy
  evm.model.supercontig_244.7  12 LPPGFRFHPTDEELISFYLVNKISDATFTG-RAIADVDLNKSEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGY 92 
                                  79*************************999.89***************99999***************************** PP

                          NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  Wk+tgkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+
  evm.model.supercontig_244.7  93 WKTTGKDKEIFNSvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 139
                                  ***********9989999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-639161IPR003441NAC domain
PROSITE profilePS5100561.06112161IPR003441NAC domain
PfamPF023652.5E-2813139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEAGERKEDQ SLPPGFRFHP TDEELISFYL VNKISDATFT GRAIADVDLN KSEPWDLPGK  60
AKMGEKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFNSVTSEL VGMKKTLVFY  120
RGRAPRGEKT NWVMHEYRIH SKSAFRTTKQ DEWVVCRVFQ KSAGVKKYPT TSQSRSVNPY  180
NLEMGTSVIP PVMQQAAENY HHFPMGRSYM QTNAELAELS RVLRGASSTS CASSNQLPIQ  240
SHINYPGGGG CFTISGLNLN LGGATVAQPV LRPVQPPPPV NQQDVAAASM MNSTSTSFAA  300
ENVYAAEINS ANGPSNRFIS MDNCMDFDNF WPPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-571116716171NO APICAL MERISTEM PROTEIN
1ut4_B4e-571116716171NO APICAL MERISTEM PROTEIN
1ut7_A4e-571116716171NO APICAL MERISTEM PROTEIN
1ut7_B4e-571116716171NO APICAL MERISTEM PROTEIN
4dul_A4e-571116716171NAC domain-containing protein 19
4dul_B4e-571116716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_244.7
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912668.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ28e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2C9W4N00.0A0A2C9W4N0_MANES; Uncharacterized protein
STRINGevm.model.supercontig_244.70.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68512841
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-119NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]