PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_146.41
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CAMTA
Protein Properties Length: 730aa    MW: 82566.9 Da    PI: 9.0365
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_146.41genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1100.41.4e-311587274
                          CG-1  2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74
                                  ++ ++rwl++ ei++iL n+++++lt +++ +p+ gsl+L++rk +ryfrkDG+ w+kkkdgktvrE+hekLK
  evm.model.supercontig_146.41 15 QDAQSRWLRPAEICEILRNYRRFDLTPDPPVKPSAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLK 87
                                  44599*******************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143744.01910150IPR005559CG-1 DNA-binding domain
SMARTSM010766.5E-2813136IPR005559CG-1 DNA-binding domain
PfamPF038592.3E-261787IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.8E-8300390IPR013783Immunoglobulin-like fold
CDDcd001021.49E-5301389No hitNo description
SuperFamilySSF812963.08E-18302388IPR014756Immunoglobulin E-set
PfamPF018336.7E-7302387IPR002909IPT domain
PROSITE profilePS5029712.116482553IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-9484547IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-7487547IPR020683Ankyrin repeat-containing domain
CDDcd002046.63E-8490553No hitNo description
SMARTSM0001542588610IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.58E-8625693IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.19642664IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.682643672IPR000048IQ motif, EF-hand binding site
PfamPF006120.0014644663IPR000048IQ motif, EF-hand binding site
SMARTSM000155.2E-4665687IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633666694IPR000048IQ motif, EF-hand binding site
PfamPF006126.1E-5668687IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MLISWNLADL QQILQDAQSR WLRPAEICEI LRNYRRFDLT PDPPVKPSAG SLFLFDRKAL  60
RYFRKDGHRW RKKKDGKTVR EAHEKLKGLL FSEFSELSRN STGSWLSGAK VNWPEVHSLS  120
RNSFSMNDQK FPIELPGGAD FTAHKLTDGR LDAGSRVLDI ATCGDGICTD VDSQSVTAAS  180
QRTVQVPQNH ELPHLYHRQF PNNSGQQIFV SSSTEIEHKP EDVGQTNYKS GDLKKLDSFG  240
RWMDKEIGGD CDNSLMASDS GKYWSTLDAG NEDKEVSSLS RHMQLDIDSL GPSLSQEQLF  300
SILDFSPDWA YTGVKTKVLI VGSFLGSKKL TSSTNWGCMF GEVEVSAEVV SDNIIRCQAP  360
SHVPGRVPFY ITCSNRLACS EVREFEYREN PSSRAFKCAP DEEMRLQTCF ARLLYLGPDE  420
KWLYCSINEC DRCKLRSTIY STRSIGDKDW ERVKETSGDS KVVFADARDK LLQIMFEERL  480
CEWLIQKVHE CGKGPNVLDD GGLGVIHLAA SLGYDWAMRP IVAAGVNPNF RDARGRTGLH  540
WASYFGSDML LRFRSRKDCE TASQQVIPSD GTLDKQLSLK GSLAAVRKSA HAAALIQAAF  600
RAHSFRHRQS MKSNIDVSEV SVDLVALGSL NKVQKLSHFE DYLHSAAVKI QQKYRGWKGR  660
KEFLKIRSRI VKIQAHVRGH QVRKQYKKVV WSVSIVEKAI LRWRRKGQVC VDFSENSLEM  720
GRRVEKLMI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_146.41
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889521.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A067G9R10.0A0A067G9R1_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_146.410.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16526911
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-109signal responsive 1