PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_140.14

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

SRS

Protein Properties

Length: 303aa MW: 33780.3 Da PI: 7.2092

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_140.14	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221.3	1.9e-68	81	236	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskr 74 r+g+++CqdCGnqakkdCah RCRtCCksrgf+C+th+kstWvpaakrrerqqq +a++++++ ++ +e+++kr evm.model.supercontig_140.14 81 RQGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCHTHLKSTWVPAAKRRERQQQFSALQNQNQDHQqqqqllqfREENPKR 161 7899************************************************999988887776556666555555555 PP DUF702 75 krelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +re+ + + +l+st+l+++ + le++++P+ev+s+a+frcvrvs+vdd +eelaYqtav+igGhvfkGiLydqG+e+ evm.model.supercontig_140.14 162 QREN--QGACSLASTRLPTS---SGLEIENFPQEVNSTALFRCVRVSAVDDPDEELAYQTAVNIGGHVFKGILYDQGTES 236 5554..55666666666655...57899***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.1E-65	84	235	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.0E-26	86	128	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.0E-26	187	233	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAGFFYLGGR EGGTSSKQEE DKEENNLYLY RSNEEIYNKG FEIWPEYYQQ NTSSFSFGVG 60 PSRRTSLGDD WSSRSGFTLM RQGGMNCQDC GNQAKKDCAH LRCRTCCKSR GFQCHTHLKS 120 TWVPAAKRRE RQQQFSALQN QNQDHQQQQQ LLQFREENPK RQRENQGACS LASTRLPTSS 180 GLEIENFPQE VNSTALFRCV RVSAVDDPDE ELAYQTAVNI GGHVFKGILY DQGTESRYNM 240 DHHHQHLNLI TASTTAATTT TTAAGAGTST NPAGTPLLDP SLFPAPLNAF IAGTQFFPPP 300 RS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_140.14

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889704.1	0.0	protein SHI RELATED SEQUENCE 5
Swissprot	Q9LQZ5	8e-94	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A061FDV1	1e-136	A0A061FDV1_THECC; SHI-related sequence 7, putative
TrEMBL	A0A2P5YQW0	1e-136	A0A2P5YQW0_GOSBA; Uncharacterized protein
STRING	evm.model.supercontig_140.14	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-86	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_140.14

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]