PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_123.53
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CO-like
Protein Properties Length: 498aa    MW: 54228.7 Da    PI: 7.0701
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_123.53genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-065495337
                      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg........H 37
                                   ++C++++ ++++  C +++  lC++C    H g        H
  evm.model.supercontig_123.53 54 SQICDNCGTEPVSVRCATDNLVLCQECDWDAH-GtcsvsathH 95
                                  579************************99999.5477777744 PP
2CCT63.85.3e-22448492145
                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                                   R +a++RYkeK+ktR+++K+irYesRKa+Ae+R+RvKGrFvk++e
  evm.model.supercontig_123.53 448 RGNAMQRYKEKKKTRRYDKHIRYESRKARAETRKRVKGRFVKASE 492
                                   7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.769956IPR000315B-box-type zinc finger
SMARTSM003367.0E-10956IPR000315B-box-type zinc finger
CDDcd000214.86E-71244No hitNo description
PROSITE profilePS501199.35299IPR000315B-box-type zinc finger
CDDcd000213.38E-75699No hitNo description
SMARTSM003361.65799IPR000315B-box-type zinc finger
PfamPF062034.6E-16448490IPR010402CCT domain
PROSITE profilePS5101714.862448490IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSWLKSDVKR TVPCDYCNQH SPVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC  60
GTEPVSVRCA TDNLVLCQEC DWDAHGTCSV SATHHRTQIQ GFSGCPSALE LASLWGLDLG  120
SKKPHELPPL IDNWTGCQDS VMPIDWWGYK SDGGGDGLSF QELVVPNERG MVCQGVKSGL  180
VEYTVSKKQS PNCGKHKQVI HKQLMELLKR ELMGHDGGGG ADDGGGGGGG ESTVPSTPKR  240
SNWATNAEDI GVENAGGDAG VGGQQQQSME HQTTPIMPLI TLPTQVGLRE DELLVGGDMV  300
WNTNVSGQNT QIWDFHLGQS RDHNSNQLED AYGTTDAGFM IKNFSELLTQ TSLTSAKMLG  360
DIYQMNCSIT HEDMASFSNK TTQQTTSQGP ATSESNNLPV ANGSAIGKNK TPSCSKEIHF  420
AEGSSFVKGN GTRVSATMAD LELLAQNRGN AMQRYKEKKK TRRYDKHIRY ESRKARAETR  480
KRVKGRFVKA SEAAPND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_123.53
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890922.10.0zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A067JHF90.0A0A067JHF9_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_123.530.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Representative plantOGRP5453813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.23e-67B-box type zinc finger protein with CCT domain