PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_115.10
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HB-other
Protein Properties Length: 348aa    MW: 39613.3 Da    PI: 4.8253
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_115.10genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.82.4e-10278325653
                                   S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                      Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                   +++k qle+Le+++++++ p+ +++  + + ++L+ ++V  WF  rR+
  evm.model.supercontig_115.10 278 RLKKVQLETLERVYKRSKRPTNAMISSIVQVTNLPRKRVLKWFEDRRT 325
                                   57899******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.446270330IPR001356Homeobox domain
SuperFamilySSF466891.37E-9273328IPR009057Homeodomain-like
CDDcd000866.43E-8273324No hitNo description
SMARTSM003892.7E-5276334IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-9278325IPR009057Homeodomain-like
PfamPF000467.2E-8278325IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAFPLSLNTS VAFKCLPSFS SSSHGERLLF FCSRNTNPVL PRHSPSRLVL ALARRRNQNS  60
AVASDSSDKK KKKKSFARQS TEEEEEDLDD DPFEALFSQL EEDLKNDTGS VDDDDDEINE  120
EDINALAREL EEALRDGDGL EMFKLAAESD NDEAPYDDDG DNDAYEDEDD EKPVKLKNWQ  180
LRRLAYALKA GRRKTSIKNL AAELCLDRSF VLEMLRDPPP NLVMMSAALP DKPPTTTIPE  240
ANPPETISAE SVGDTIEPET KKEEPIHVMQ QRWSAQKRLK KVQLETLERV YKRSKRPTNA  300
MISSIVQVTN LPRKRVLKWF EDRRTEDGVP DHHRPYRRPV PETIFSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15373RRRNQNSAVASDSSDKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_115.10
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891472.10.0protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 isoform X1
SwissprotQ8H0V51e-89OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLF6H3091e-123F6H309_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_115.100.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120772631
Representative plantOGRP69271618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.19e-82overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]