PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh3_pg.C_10352
Common NameCHLNCDRAFT_56599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family HB-other
Protein Properties Length: 1853aa    MW: 196811 Da    PI: 6.5644
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh3_pg.C_10352genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.97e-13428477756
                                 --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                  t+ q e+Le++F+ ++yp++++++ L +k+gLt +qV +WF  rR kek
  estExt_fgenesh3_pg.C_10352 428 KTPFQKEALEAAFALSQYPTEDMKRVLGSKIGLTAQQVGTWFTHRRRKEK 477
                                 6899*********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF695931.57E-818196No hitNo description
PfamPF015533.0E-570183IPR002123Phospholipid/glycerol acyltransferase
SMARTSM005637.3E-573192IPR002123Phospholipid/glycerol acyltransferase
Gene3DG3DSA:1.10.10.602.3E-14402477IPR009057Homeodomain-like
SuperFamilySSF466894.28E-13404478IPR009057Homeodomain-like
PROSITE profilePS5007113.896419479IPR001356Homeobox domain
SMARTSM003892.2E-12421483IPR001356Homeobox domain
CDDcd000869.13E-11422477No hitNo description
PfamPF000463.1E-10428477IPR001356Homeobox domain
SMARTSM005716.1E-7787847IPR018501DDT domain
PROSITE profilePS5082713.466787847IPR018501DDT domain
PfamPF027912.6E-8792841IPR018501DDT domain
PfamPF050668.9E-159571024IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156132.1E-713011393IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 1853 aa     Download sequence    Send to blast
MMSPRTLLGL PAYLYGVGCM FWCFQLGCLT GFIKWWQFSP ARNDIVAAVR FLKWAFKYRV  60
LKLGSNEVYS GKCMYLANHR SWGDFFVDMY VTGCRGVPLS RRAVGAAFPA FTTSLMALRS  120
ILLFNRLGVK DTEKFNRWLD TELAKGGPQT NLLVYPEGKR SQQTASLPLK RGMLRYAFTR  180
KLPVQVVVTA YKEEILNERR MWTHFGRTLV TGCSEVLESS RFDDFEEFAA AVQRLWDAQW  240
EAVFAAPRHG LPVMPEPAGP AGNYSPATCA KQTASLAFWM AVLVGGTRLM LRALAAVAAW  300
LPGGRYLVWA LVLYSVASLA AAALLPPPAA RHSSTDAVAP APEAAPMEPA APVAAPAAPA  360
PAASPAVAAL GQEPASAAAS RGGTPPAAAG TGGGAASAAT PSSPAATPSG AAAANATGSS  420
GKKVAQQKTP FQKEALEAAF ALSQYPTEDM KRVLGSKIGL TAQQVGTWFT HRRRKEKDAE  480
IAAIAAAQLK QELAAAAAAQ GGDAAAAPPV APAPELVEAA KAQLGVPFRE DGPPLGFEFD  540
EIPLLPGNPV VMGQSTGSSG GGKKRKAAAA GYADDEEEDP DFVLGGGGGW LCVCVCVCVC  600
VSVCVAREQE KMLREKERMD MKVAKERERE LARLEGERRK HLERVMKEQK KLIALQEKER  660
ERLEKMRQRE EKKREKEVLK ALQAQEKREM RLRQREAGVT GPRDDADIEW DALLADYRAK  720
HGGVQPLARI AELLIKWRRW CRLPPDVALP ADEDGAAPAG FPPLPSRPPF PPPTVALAPA  780
FPPELGQEQG SKLLTSWSFL HGFGGMLGLP HCTLSELLAA VAKGSSSSLL ASLHITLLRL  840
VQADMEEAHA AQFGAYATTT AAMLAEQRGG DSRFMSAAHM LEEAWSWGFD VDGWRAHLNS  900
LTWPEVARQL AVTAGLGRRR PKPKKEERPK MGQEGEDTVQ DGSGDLKLRL PPRLGVGTVK  960
AAAWQVLAEA GPEGMRVEDI AREIQKRGFR DLRSSKTPEA SVAGAMGRDV LFVRTKAATF  1020
ALQAIIAHTN QQRRTGGAAA GGDAAAGDAG AKAEGQEAAA ADPELLSPGG TKIVVVKEDE  1080
QQEEHHAEEE EDEDEEEKQE EEEEEARRRE QLGEAWVEAL QGADYDGLSL EHRVGMLCSL  1140
CHLAMDSPSI KETLERRMEE QQRIKKQSWE EARAEKRRKQ TEAAAKAQAA AEEAQRALQR  1200
FQQQQLLQQG GIAAPAAAQQ AGAGEPAAAP AAAPAGGEPT AAGQAGTPAA PHSADPAAPA  1260
SAAAIATATK EGGGGDDKEN DVERARQRAE QVRREMEANS VRLEPLGMDR RYNKYWRLAG  1320
VPLGAAAAIQ QAGAKEEEGG EHAHQAGDRL LFESHEDGEM SLVCGSAALA ALVAALERRG  1380
ARESLLYASL LRYRGVLEAG MPAAPLALPA AEGEAAEAGA EQRLREMLLS LVLAAPPLQP  1440
VQVSGRAGKK AKEAAAATSA AEQAATTELA PLRPGDSLAV TRLKLDLLCC QRGLPAAALA  1500
KPLVPAAWQQ AVREADSLQQ LRSLLGELEA ALDPSRLHPL FMRQPPLVRG AWLRTGREVA  1560
DAQSLAELPE SPSGARDASP GAFGGGRSRD ASPGAAGAEA GAEAEEEPPL AWLPVTAAAL  1620
AWRIQCLDAS LLYGAAEAQA AARESLAGYQ FIQRPTAAGV VCGQPLGLAG RVKQTLFPPL  1680
PQRLLYSPRC DFSFPHIQFQ ADVASGSDAL VASTAGRGGR GRGRGRGRGR GGGRGGRGRG  1740
RGTPAASGVA GDGALPAGGR GGKKKRAPRR PGVTDKSALA KEWEKQEDSD SEKHYGTDFE  1800
DEFVSPQQPQ RPSGSLPPSG PASTAGDDDD EQGSVLAQSE DEAVSSEGEG AE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471476RRRKEK
2612617LREKER
3918925RRPKPKKE
417191729RGRGRGRGRGR
517331741RGGRGRGRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005852242.10.0hypothetical protein CHLNCDRAFT_56599
TrEMBLE1Z3B40.0E1Z3B4_CHLVA; Uncharacterized protein
STRINGXP_005852242.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP510588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.14e-25Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]