PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_10352

Common Name

CHLNCDRAFT_56599

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

HB-other

Protein Properties

Length: 1853aa MW: 196811 Da PI: 6.5644

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_10352	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.9	7e-13	428	477	7	56
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 t+ q e+Le++F+ ++yp++++++ L +k+gLt +qV +WF rR kek estExt_fgenesh3_pg.C_10352 428 KTPFQKEALEAAFALSQYPTEDMKRVLGSKIGLTAQQVGTWFTHRRRKEK 477 6899*********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF69593	1.57E-8	18	196	No hit	No description
Pfam	PF01553	3.0E-5	70	183	IPR002123	Phospholipid/glycerol acyltransferase
SMART	SM00563	7.3E-5	73	192	IPR002123	Phospholipid/glycerol acyltransferase
Gene3D	G3DSA:1.10.10.60	2.3E-14	402	477	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-13	404	478	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.896	419	479	IPR001356	Homeobox domain
SMART	SM00389	2.2E-12	421	483	IPR001356	Homeobox domain
CDD	cd00086	9.13E-11	422	477	No hit	No description
Pfam	PF00046	3.1E-10	428	477	IPR001356	Homeobox domain
SMART	SM00571	6.1E-7	787	847	IPR018501	DDT domain
PROSITE profile	PS50827	13.466	787	847	IPR018501	DDT domain
Pfam	PF02791	2.6E-8	792	841	IPR018501	DDT domain
Pfam	PF05066	8.9E-15	957	1024	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15613	2.1E-7	1301	1393	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0016746	Molecular Function	transferase activity, transferring acyl groups

Sequence ? help Back to Top
Protein Sequence Length: 1853 aa Download sequence Send to blast
MMSPRTLLGL PAYLYGVGCM FWCFQLGCLT GFIKWWQFSP ARNDIVAAVR FLKWAFKYRV 60 LKLGSNEVYS GKCMYLANHR SWGDFFVDMY VTGCRGVPLS RRAVGAAFPA FTTSLMALRS 120 ILLFNRLGVK DTEKFNRWLD TELAKGGPQT NLLVYPEGKR SQQTASLPLK RGMLRYAFTR 180 KLPVQVVVTA YKEEILNERR MWTHFGRTLV TGCSEVLESS RFDDFEEFAA AVQRLWDAQW 240 EAVFAAPRHG LPVMPEPAGP AGNYSPATCA KQTASLAFWM AVLVGGTRLM LRALAAVAAW 300 LPGGRYLVWA LVLYSVASLA AAALLPPPAA RHSSTDAVAP APEAAPMEPA APVAAPAAPA 360 PAASPAVAAL GQEPASAAAS RGGTPPAAAG TGGGAASAAT PSSPAATPSG AAAANATGSS 420 GKKVAQQKTP FQKEALEAAF ALSQYPTEDM KRVLGSKIGL TAQQVGTWFT HRRRKEKDAE 480 IAAIAAAQLK QELAAAAAAQ GGDAAAAPPV APAPELVEAA KAQLGVPFRE DGPPLGFEFD 540 EIPLLPGNPV VMGQSTGSSG GGKKRKAAAA GYADDEEEDP DFVLGGGGGW LCVCVCVCVC 600 VSVCVAREQE KMLREKERMD MKVAKERERE LARLEGERRK HLERVMKEQK KLIALQEKER 660 ERLEKMRQRE EKKREKEVLK ALQAQEKREM RLRQREAGVT GPRDDADIEW DALLADYRAK 720 HGGVQPLARI AELLIKWRRW CRLPPDVALP ADEDGAAPAG FPPLPSRPPF PPPTVALAPA 780 FPPELGQEQG SKLLTSWSFL HGFGGMLGLP HCTLSELLAA VAKGSSSSLL ASLHITLLRL 840 VQADMEEAHA AQFGAYATTT AAMLAEQRGG DSRFMSAAHM LEEAWSWGFD VDGWRAHLNS 900 LTWPEVARQL AVTAGLGRRR PKPKKEERPK MGQEGEDTVQ DGSGDLKLRL PPRLGVGTVK 960 AAAWQVLAEA GPEGMRVEDI AREIQKRGFR DLRSSKTPEA SVAGAMGRDV LFVRTKAATF 1020 ALQAIIAHTN QQRRTGGAAA GGDAAAGDAG AKAEGQEAAA ADPELLSPGG TKIVVVKEDE 1080 QQEEHHAEEE EDEDEEEKQE EEEEEARRRE QLGEAWVEAL QGADYDGLSL EHRVGMLCSL 1140 CHLAMDSPSI KETLERRMEE QQRIKKQSWE EARAEKRRKQ TEAAAKAQAA AEEAQRALQR 1200 FQQQQLLQQG GIAAPAAAQQ AGAGEPAAAP AAAPAGGEPT AAGQAGTPAA PHSADPAAPA 1260 SAAAIATATK EGGGGDDKEN DVERARQRAE QVRREMEANS VRLEPLGMDR RYNKYWRLAG 1320 VPLGAAAAIQ QAGAKEEEGG EHAHQAGDRL LFESHEDGEM SLVCGSAALA ALVAALERRG 1380 ARESLLYASL LRYRGVLEAG MPAAPLALPA AEGEAAEAGA EQRLREMLLS LVLAAPPLQP 1440 VQVSGRAGKK AKEAAAATSA AEQAATTELA PLRPGDSLAV TRLKLDLLCC QRGLPAAALA 1500 KPLVPAAWQQ AVREADSLQQ LRSLLGELEA ALDPSRLHPL FMRQPPLVRG AWLRTGREVA 1560 DAQSLAELPE SPSGARDASP GAFGGGRSRD ASPGAAGAEA GAEAEEEPPL AWLPVTAAAL 1620 AWRIQCLDAS LLYGAAEAQA AARESLAGYQ FIQRPTAAGV VCGQPLGLAG RVKQTLFPPL 1680 PQRLLYSPRC DFSFPHIQFQ ADVASGSDAL VASTAGRGGR GRGRGRGRGR GGGRGGRGRG 1740 RGTPAASGVA GDGALPAGGR GGKKKRAPRR PGVTDKSALA KEWEKQEDSD SEKHYGTDFE 1800 DEFVSPQQPQ RPSGSLPPSG PASTAGDDDD EQGSVLAQSE DEAVSSEGEG AE*

Sequence ? help Back to Top

Protein Sequence Length: 1853 aa Download sequence Send to blast

MMSPRTLLGL PAYLYGVGCM FWCFQLGCLT GFIKWWQFSP ARNDIVAAVR FLKWAFKYRV  60
LKLGSNEVYS GKCMYLANHR SWGDFFVDMY VTGCRGVPLS RRAVGAAFPA FTTSLMALRS  120
ILLFNRLGVK DTEKFNRWLD TELAKGGPQT NLLVYPEGKR SQQTASLPLK RGMLRYAFTR  180
KLPVQVVVTA YKEEILNERR MWTHFGRTLV TGCSEVLESS RFDDFEEFAA AVQRLWDAQW  240
EAVFAAPRHG LPVMPEPAGP AGNYSPATCA KQTASLAFWM AVLVGGTRLM LRALAAVAAW  300
LPGGRYLVWA LVLYSVASLA AAALLPPPAA RHSSTDAVAP APEAAPMEPA APVAAPAAPA  360
PAASPAVAAL GQEPASAAAS RGGTPPAAAG TGGGAASAAT PSSPAATPSG AAAANATGSS  420
GKKVAQQKTP FQKEALEAAF ALSQYPTEDM KRVLGSKIGL TAQQVGTWFT HRRRKEKDAE  480
IAAIAAAQLK QELAAAAAAQ GGDAAAAPPV APAPELVEAA KAQLGVPFRE DGPPLGFEFD  540
EIPLLPGNPV VMGQSTGSSG GGKKRKAAAA GYADDEEEDP DFVLGGGGGW LCVCVCVCVC  600
VSVCVAREQE KMLREKERMD MKVAKERERE LARLEGERRK HLERVMKEQK KLIALQEKER  660
ERLEKMRQRE EKKREKEVLK ALQAQEKREM RLRQREAGVT GPRDDADIEW DALLADYRAK  720
HGGVQPLARI AELLIKWRRW CRLPPDVALP ADEDGAAPAG FPPLPSRPPF PPPTVALAPA  780
FPPELGQEQG SKLLTSWSFL HGFGGMLGLP HCTLSELLAA VAKGSSSSLL ASLHITLLRL  840
VQADMEEAHA AQFGAYATTT AAMLAEQRGG DSRFMSAAHM LEEAWSWGFD VDGWRAHLNS  900
LTWPEVARQL AVTAGLGRRR PKPKKEERPK MGQEGEDTVQ DGSGDLKLRL PPRLGVGTVK  960
AAAWQVLAEA GPEGMRVEDI AREIQKRGFR DLRSSKTPEA SVAGAMGRDV LFVRTKAATF  1020
ALQAIIAHTN QQRRTGGAAA GGDAAAGDAG AKAEGQEAAA ADPELLSPGG TKIVVVKEDE  1080
QQEEHHAEEE EDEDEEEKQE EEEEEARRRE QLGEAWVEAL QGADYDGLSL EHRVGMLCSL  1140
CHLAMDSPSI KETLERRMEE QQRIKKQSWE EARAEKRRKQ TEAAAKAQAA AEEAQRALQR  1200
FQQQQLLQQG GIAAPAAAQQ AGAGEPAAAP AAAPAGGEPT AAGQAGTPAA PHSADPAAPA  1260
SAAAIATATK EGGGGDDKEN DVERARQRAE QVRREMEANS VRLEPLGMDR RYNKYWRLAG  1320
VPLGAAAAIQ QAGAKEEEGG EHAHQAGDRL LFESHEDGEM SLVCGSAALA ALVAALERRG  1380
ARESLLYASL LRYRGVLEAG MPAAPLALPA AEGEAAEAGA EQRLREMLLS LVLAAPPLQP  1440
VQVSGRAGKK AKEAAAATSA AEQAATTELA PLRPGDSLAV TRLKLDLLCC QRGLPAAALA  1500
KPLVPAAWQQ AVREADSLQQ LRSLLGELEA ALDPSRLHPL FMRQPPLVRG AWLRTGREVA  1560
DAQSLAELPE SPSGARDASP GAFGGGRSRD ASPGAAGAEA GAEAEEEPPL AWLPVTAAAL  1620
AWRIQCLDAS LLYGAAEAQA AARESLAGYQ FIQRPTAAGV VCGQPLGLAG RVKQTLFPPL  1680
PQRLLYSPRC DFSFPHIQFQ ADVASGSDAL VASTAGRGGR GRGRGRGRGR GGGRGGRGRG  1740
RGTPAASGVA GDGALPAGGR GGKKKRAPRR PGVTDKSALA KEWEKQEDSD SEKHYGTDFE  1800
DEFVSPQQPQ RPSGSLPPSG PASTAGDDDD EQGSVLAQSE DEAVSSEGEG AE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	476	RRRKEK
2	612	617	LREKER
3	918	925	RRPKPKKE
4	1719	1729	RGRGRGRGRGR
5	1733	1741	RGGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005852242.1	0.0	hypothetical protein CHLNCDRAFT_56599
TrEMBL	E1Z3B4	0.0	E1Z3B4_CHLVA; Uncharacterized protein
STRING	XP_005852242.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5105	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	4e-25	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	17359567

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]