PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold15291-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 251aa    MW: 28800.1 Da    PI: 9.1924
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold15291-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-181562421098
                                                       HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHH CS
                                                B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWke 67 
                                                       +l ++ +++p +fa +h  g     ++  +le+++gr+W+v++  r++  + + l++GW  
  snap_masked-scaffold15291-abinit-gene-0.3-mRNA-1 156 NLHKHTMYIPARFAITHlcG-----PQIAKLETSDGRQWSVNCHKRGRLTSaMNLGRGWTV 211
                                                       567889***********654.....3369**************66555555789******* PP

                                                       HHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                                B3  68 FvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                       F ++n L+egD++vF+l++r+   l v++fr
  snap_masked-scaffold15291-abinit-gene-0.3-mRNA-1 212 FSRENSLEEGDVCVFELIKRKPVVLSVSIFR 242
                                                       *******************999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.388154IPR003340B3 DNA binding domain
CDDcd100171.12E-8454No hitNo description
Gene3DG3DSA:2.40.330.108.3E-10556IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-10555IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-20141242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-21141242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-19146242No hitNo description
PROSITE profilePS5086312.238147244IPR003340B3 DNA binding domain
SMARTSM010191.7E-12148244IPR003340B3 DNA binding domain
PfamPF023621.0E-16156242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPVHHMSIPE KFVREFGDEL SAVAKLTVPY GRSWQVGLEK ADKNIRFCDG WKDFTATEIQ  60
YPLSNHCKLE DQVDGMELDD ANITMHDKNE NEMSYSDDEL PTKHEELREK SVKKEISGMS  120
SKGKLMMSRG RERAIQAARR FKPKNPSFMR IIGRANLHKH TMYIPARFAI THLCGPQIAK  180
LETSDGRQWS VNCHKRGRLT SAMNLGRGWT VFSRENSLEE GDVCVFELIK RKPVVLSVSI  240
FRVVDYALLV K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-2112024621145B3 domain-containing transcription factor VRN1
4i1k_B2e-2112024621145B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901785.11e-153B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9HQJ91e-105A0A2N9HQJ9_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-22related to vernalization1 1